Analysis of interatomic Contacts of Structural Units in PDB entry:
7M6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M6J entry

There are 6 chains in PDB entry 7M6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 38	ARG 300
B	VAL 23	LYS 309
C	GLY 29	ALA 316
D	GLY 29	THR 318
E	CYS 14	LYS 309
F	GLU 37	LEU 304

There are 59 helices in PDB entry 7M6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	59	Right-handed alpha
Helix 2	AA2	A	70	74	Right-handed 310
Helix 3	AA3	A	115	128	Right-handed alpha
Helix 4	AA4	A	163	172	Right-handed alpha
Helix 5	AA5	A	183	187	Right-handed 310
Helix 6	AA6	A	188	206	Right-handed alpha
Helix 7	AA7	A	225	234	Right-handed alpha
Helix 8	AA8	A	272	283	Right-handed alpha
Helix 9	AA9	A	283	300	Right-handed alpha
Helix 10	AB1	B	27	40	Right-handed alpha
Helix 11	AB2	B	54	63	Right-handed alpha
Helix 12	AB3	B	115	118	Right-handed 310
Helix 13	AB4	B	119	134	Right-handed alpha
Helix 14	AB5	B	163	172	Right-handed alpha
Helix 15	AB6	B	190	208	Right-handed alpha
Helix 16	AB7	B	223	232	Right-handed alpha
Helix 17	AB8	B	270	275	Right-handed alpha
Helix 18	AB9	B	283	294	Right-handed alpha
Helix 19	AC1	C	34	48	Right-handed alpha
Helix 20	AC2	C	62	71	Right-handed alpha
Helix 21	AC3	C	81	85	Right-handed 310
Helix 22	AC4	C	127	145	Right-handed alpha
Helix 23	AC5	C	173	183	Right-handed alpha
Helix 24	AC6	C	196	199	Right-handed 310
Helix 25	AC7	C	200	218	Right-handed alpha
Helix 26	AC8	C	240	244	Right-handed 310
Helix 27	AC9	C	283	289	Right-handed alpha
Helix 28	AD1	C	293	304	Right-handed alpha
Helix 29	AD2	C	304	314	Right-handed alpha
Helix 30	AD3	D	35	48	Right-handed alpha
Helix 31	AD4	D	63	71	Right-handed alpha
Helix 32	AD5	D	127	145	Right-handed alpha
Helix 33	AD6	D	173	180	Right-handed alpha
Helix 34	AD7	D	182	186	Right-handed 310
Helix 35	AD8	D	195	199	Right-handed 310
Helix 36	AD9	D	200	216	Right-handed alpha
Helix 37	AE1	D	281	288	Right-handed alpha
Helix 38	AE2	D	293	305	Right-handed alpha
Helix 39	AE3	D	305	317	Right-handed alpha
Helix 40	AE4	E	27	38	Right-handed alpha
Helix 41	AE5	E	54	63	Right-handed alpha
Helix 42	AE6	E	110	114	Right-handed 310
Helix 43	AE7	E	115	134	Right-handed alpha
Helix 44	AE8	E	163	172	Right-handed alpha
Helix 45	AE9	E	190	208	Right-handed alpha
Helix 46	AF1	E	222	231	Right-handed alpha
Helix 47	AF2	E	270	276	Right-handed alpha
Helix 48	AF3	E	282	293	Right-handed alpha
Helix 49	AF4	E	294	303	Right-handed alpha
Helix 50	AF5	F	50	59	Right-handed alpha
Helix 51	AF6	F	73	77	Right-handed 310
Helix 52	AF7	F	115	130	Right-handed alpha
Helix 53	AF8	F	161	171	Right-handed alpha
Helix 54	AF9	F	183	187	Right-handed 310
Helix 55	AG1	F	188	207	Right-handed alpha
Helix 56	AG2	F	223	235	Right-handed alpha
Helix 57	AG3	F	272	283	Right-handed alpha
Helix 58	AG4	F	283	294	Right-handed alpha
Helix 59	AG5	F	295	302	Right-handed alpha

There are 14 sheets in PDB entry 7M6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	150	153	parallel
Strand 3	A	178	181	parallel
Strand 4	A	237	238	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	261	264	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	95	96	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	84	85	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	45	48	parallel
Strand 4	B	151	155	parallel
Strand 5	B	179	183	parallel
Strand 6	B	235	236	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	259	262	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	102	first strand
Strand 2	C	105	113	anti-parallel
Strand 3	C	49	56	parallel
Strand 4	C	160	165	parallel
Strand 5	C	188	194	parallel
Strand 6	C	247	248	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	270	272	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	100	first strand
Strand 2	D	107	113	anti-parallel
Strand 3	D	49	57	parallel
Strand 4	D	160	165	parallel
Strand 5	D	189	193	parallel
Strand 6	D	246	247	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	267	first strand
Strand 2	D	270	273	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	86	first strand
Strand 2	E	95	103	anti-parallel
Strand 3	E	41	48	parallel
Strand 4	E	150	155	parallel
Strand 5	E	179	183	parallel
Strand 6	E	235	236	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	243	first strand
Strand 2	E	252	254	anti-parallel
Strand 3	E	261	262	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	85	first strand
Strand 2	F	98	101	anti-parallel
Strand 3	F	39	43	parallel
Strand 4	F	148	153	parallel
Strand 5	F	176	181	parallel
Strand 6	F	237	238	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	246	first strand
Strand 2	F	253	258	anti-parallel
Strand 3	F	261	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M6J