Analysis of interatomic Contacts of Structural Units in PDB entry:
7M6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M6T entry

There are 6 chains in PDB entry 7M6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 31ILE 110
A
 VAL 112VAL 198
B
 ASP 2LEU 88
B
 ILE 90LYS 104
C
 MET 17CYS 112
D
 LEU 4MET 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7M6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 47Right-handed alpha
Helix 2
AA2
A
54 63Right-handed alpha
Helix 3
AA3
A
121 133Right-handed alpha
Helix 4
AA4
A
162 175Right-handed alpha
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
184 194Right-handed alpha
Helix 7
AA7
B
23 36Right-handed alpha
Helix 8
AA8
B
38 40Right-handed 310
Helix 9
AA9
B
56 61Right-handed alpha
Helix 10
AB1
B
100 104Right-handed 310
Helix 11
AB2
C
33 37Right-handed alpha
Helix 12
AB3
C
39 45Right-handed alpha
Helix 13
AB4
C
66 83Right-handed alpha
Helix 14
AB5
C
96 111Right-handed alpha
Helix 15
AB6
D
5 14Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7M6T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
91 100anti-parallel
Strand 4
A
103 106anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
3 9parallel
Strand 5
B
12 18anti-parallel
Strand 6
C
28 32parallel
Strand 7
C
18 22anti-parallel
Strand 8
C
59 61parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il