Analysis of interatomic Contacts of Structural Units in PDB entry:
7M78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M78 entry

There are 12 chains in PDB entry 7M78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	GLY 755
B	ALA 1	PHE 739
C	ALA 1	TYR 80
D	THR 1	PRO 138
E	VAL 1	ALA 69
F	ASP 1	ARG 141
I	MET 1	ALA 38
J	MET 1	LEU 41
K	ILE 20	LEU 77
L	LEU 4	ASN 154
M	MET 1	LYS 31
X	PRO 7	LYS 35

There are102 helices in PDB entry 7M78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	35	40	Right-handed alpha
Helix 3	AA3	A	45	54	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed alpha
Helix 5	AA5	A	65	97	Right-handed alpha
Helix 6	AA6	A	99	106	Right-handed alpha
Helix 7	AA7	A	142	151	Right-handed alpha
Helix 8	AA8	A	156	182	Right-handed alpha
Helix 9	AA9	A	186	192	Right-handed alpha
Helix 10	AB1	A	192	203	Right-handed alpha
Helix 11	AB2	A	205	217	Right-handed alpha
Helix 12	AB3	A	219	228	Right-handed alpha
Helix 13	AB4	A	232	236	Right-handed 310
Helix 14	AB5	A	240	245	Right-handed alpha
Helix 15	AB6	A	246	251	Right-handed alpha
Helix 16	AB7	A	272	276	Right-handed 310
Helix 17	AB8	A	293	313	Right-handed alpha
Helix 18	AB9	A	324	332	Right-handed alpha
Helix 19	AC1	A	343	349	Right-handed alpha
Helix 20	AC2	A	351	375	Right-handed alpha
Helix 21	AC3	A	386	419	Right-handed alpha
Helix 22	AC4	A	421	425	Right-handed 310
Helix 23	AC5	A	428	435	Right-handed alpha
Helix 24	AC6	A	436	469	Right-handed alpha
Helix 25	AC7	A	470	474	Right-handed 310
Helix 26	AC8	A	484	501	Right-handed alpha
Helix 27	AC9	A	510	514	Right-handed 310
Helix 28	AD1	A	532	559	Right-handed alpha
Helix 29	AD2	A	568	573	Right-handed alpha
Helix 30	AD3	A	581	585	Right-handed 310
Helix 31	AD4	A	590	620	Right-handed alpha
Helix 32	AD5	A	638	643	Right-handed alpha
Helix 33	AD6	A	645	653	Right-handed alpha
Helix 34	AD7	A	653	658	Right-handed alpha
Helix 35	AD8	A	658	663	Right-handed alpha
Helix 36	AD9	A	669	692	Right-handed alpha
Helix 37	AE1	A	693	711	Right-handed alpha
Helix 38	AE2	A	723	755	Right-handed alpha
Helix 39	AE3	B	8	13	Right-handed alpha
Helix 40	AE4	B	16	26	Right-handed alpha
Helix 41	AE5	B	29	33	Right-handed 310
Helix 42	AE6	B	37	71	Right-handed alpha
Helix 43	AE7	B	72	77	Right-handed alpha
Helix 44	AE8	B	96	104	Right-handed alpha
Helix 45	AE9	B	118	127	Right-handed alpha
Helix 46	AF1	B	130	156	Right-handed alpha
Helix 47	AF2	B	157	161	Right-handed 310
Helix 48	AF3	B	163	168	Right-handed alpha
Helix 49	AF4	B	169	180	Right-handed alpha
Helix 50	AF5	B	182	196	Right-handed alpha
Helix 51	AF6	B	196	202	Right-handed alpha
Helix 52	AF7	B	222	227	Right-handed alpha
Helix 53	AF8	B	268	287	Right-handed alpha
Helix 54	AF9	B	299	306	Right-handed alpha
Helix 55	AG1	B	316	320	Right-handed 310
Helix 56	AG2	B	324	332	Right-handed alpha
Helix 57	AG3	B	332	356	Right-handed alpha
Helix 58	AG4	B	363	366	Right-handed 310
Helix 59	AG5	B	367	400	Right-handed alpha
Helix 60	AG6	B	409	417	Right-handed alpha
Helix 61	AG7	B	417	449	Right-handed alpha
Helix 62	AG8	B	451	455	Right-handed 310
Helix 63	AG9	B	460	470	Right-handed alpha
Helix 64	AH1	B	472	476	Right-handed 310
Helix 65	AH2	B	486	491	Right-handed alpha
Helix 66	AH3	B	499	509	Right-handed alpha
Helix 67	AH4	B	519	546	Right-handed alpha
Helix 68	AH5	B	555	559	Right-handed 310
Helix 69	AH6	B	577	610	Right-handed alpha
Helix 70	AH7	B	612	619	Right-handed alpha
Helix 71	AH8	B	621	629	Right-handed alpha
Helix 72	AH9	B	649	672	Right-handed alpha
Helix 73	AI1	B	673	690	Right-handed alpha
Helix 74	AI2	B	707	738	Right-handed alpha
Helix 75	AI3	C	43	47	Right-handed 310
Helix 76	AI4	C	51	57	Right-handed alpha
Helix 77	AI5	D	18	24	Right-handed alpha
Helix 78	AI6	D	60	72	Right-handed alpha
Helix 79	AI7	D	73	76	Right-handed 310
Helix 80	AI8	F	11	20	Right-handed alpha
Helix 81	AI9	F	29	41	Right-handed alpha
Helix 82	AJ1	F	56	58	Right-handed 310
Helix 83	AJ2	F	59	90	Right-handed alpha
Helix 84	AJ3	F	93	98	Right-handed alpha
Helix 85	AJ4	F	102	109	Right-handed alpha
Helix 86	AJ5	F	111	114	Right-handed 310
Helix 87	AJ6	F	115	127	Right-handed alpha
Helix 88	AJ7	I	9	36	Right-handed alpha
Helix 89	AJ8	J	2	9	Right-handed alpha
Helix 90	AJ9	J	10	33	Right-handed alpha
Helix 91	AK1	K	22	29	Right-handed alpha
Helix 92	AK2	K	60	74	Right-handed alpha
Helix 93	AK3	L	9	11	Right-handed 310
Helix 94	AK4	L	24	33	Right-handed alpha
Helix 95	AK5	L	42	59	Right-handed alpha
Helix 96	AK6	L	59	66	Right-handed alpha
Helix 97	AK7	L	67	71	Right-handed 310
Helix 98	AK8	L	73	101	Right-handed alpha
Helix 99	AK9	L	113	141	Right-handed alpha
Helix 100	AL1	L	141	151	Right-handed alpha
Helix 101	AL2	M	4	29	Right-handed alpha
Helix 102	AL3	X	10	31	Right-handed alpha

There are 12 sheets in PDB entry 7M78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	184	185	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	135	136	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	525	526	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	631	633	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	112	114	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	D	114	115	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	37	40	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	58	first strand
Strand 2	D	26	33	anti-parallel
Strand 3	D	81	85	anti-parallel
Strand 4	D	91	93	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	45	48	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	57	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	42	43	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M78

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M78