Analysis of interatomic Contacts of Structural Units in PDB entry:
7M7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M7E entry

There are 4 chains in PDB entry 7M7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 4	PRO 911
A	THR 4	PRO 911
C	GLU 3	PRO 220
D	ASP 17	PHE 231

There are 67 helices in PDB entry 7M7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	15	Right-handed alpha
Helix 2	AA2	B	23	32	Right-handed alpha
Helix 3	AA3	B	50	61	Right-handed alpha
Helix 4	AA4	B	105	110	Right-handed alpha
Helix 5	AA5	B	112	118	Right-handed alpha
Helix 6	AA6	B	120	137	Right-handed alpha
Helix 7	AA7	B	181	192	Right-handed alpha
Helix 8	AA8	B	205	221	Right-handed alpha
Helix 9	AA9	B	237	246	Right-handed alpha
Helix 10	AB1	B	279	285	Right-handed alpha
Helix 11	AB2	B	311	325	Right-handed alpha
Helix 12	AB3	B	345	356	Right-handed alpha
Helix 13	AB4	B	383	399	Right-handed alpha
Helix 14	AB5	B	415	419	Right-handed 310
Helix 15	AB6	B	482	497	Right-handed alpha
Helix 16	AB7	B	503	514	Right-handed alpha
Helix 17	AB8	B	528	541	Right-handed alpha
Helix 18	AB9	B	578	583	Right-handed alpha
Helix 19	AC1	B	583	598	Right-handed alpha
Helix 20	AC2	B	599	601	Right-handed 310
Helix 21	AC3	B	604	610	Right-handed alpha
Helix 22	AC4	B	620	641	Right-handed alpha
Helix 23	AC5	B	655	663	Right-handed alpha
Helix 24	AC6	B	667	685	Right-handed alpha
Helix 25	AC7	B	699	705	Right-handed alpha
Helix 26	AC8	B	728	740	Right-handed alpha
Helix 27	AC9	B	759	769	Right-handed 310
Helix 28	AD1	B	800	808	Right-handed alpha
Helix 29	AD2	B	811	821	Right-handed alpha
Helix 30	AD3	B	836	845	Right-handed alpha
Helix 31	AD4	B	865	878	Right-handed alpha
Helix 32	AD5	A	5	12	Right-handed alpha
Helix 33	AD6	A	13	32	Right-handed alpha
Helix 34	AD7	A	50	61	Right-handed alpha
Helix 35	AD8	A	105	110	Right-handed alpha
Helix 36	AD9	A	112	118	Right-handed alpha
Helix 37	AE1	A	120	137	Right-handed alpha
Helix 38	AE2	A	181	192	Right-handed alpha
Helix 39	AE3	A	205	221	Right-handed alpha
Helix 40	AE4	A	237	246	Right-handed alpha
Helix 41	AE5	A	279	285	Right-handed alpha
Helix 42	AE6	A	311	325	Right-handed alpha
Helix 43	AE7	A	345	355	Right-handed alpha
Helix 44	AE8	A	383	399	Right-handed alpha
Helix 45	AE9	A	415	419	Right-handed 310
Helix 46	AF1	A	482	497	Right-handed alpha
Helix 47	AF2	A	503	514	Right-handed alpha
Helix 48	AF3	A	528	541	Right-handed alpha
Helix 49	AF4	A	578	583	Right-handed alpha
Helix 50	AF5	A	583	598	Right-handed alpha
Helix 51	AF6	A	599	601	Right-handed 310
Helix 52	AF7	A	604	610	Right-handed alpha
Helix 53	AF8	A	620	641	Right-handed alpha
Helix 54	AF9	A	655	663	Right-handed alpha
Helix 55	AG1	A	667	685	Right-handed alpha
Helix 56	AG2	A	697	706	Right-handed alpha
Helix 57	AG3	A	728	740	Right-handed alpha
Helix 58	AG4	A	760	762	Right-handed 310
Helix 59	AG5	A	763	771	Right-handed alpha
Helix 60	AG6	A	798	808	Right-handed alpha
Helix 61	AG7	A	811	821	Right-handed alpha
Helix 62	AG8	A	836	845	Right-handed alpha
Helix 63	AG9	A	865	878	Right-handed alpha
Helix 64	AH1	C	91	95	Right-handed 310
Helix 65	AH2	D	100	104	Right-handed 310
Helix 66	AH3	D	143	150	Right-handed alpha
Helix 67	AH4	D	205	212	Right-handed alpha

There are 23 sheets in PDB entry 7M7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	200	first strand
Strand 2	B	149	154	parallel
Strand 3	B	225	232	parallel
Strand 4	B	270	278	anti-parallel
Strand 5	B	35	43	anti-parallel
Strand 6	B	291	300	anti-parallel
Strand 7	B	449	455	anti-parallel
Strand 8	B	439	444	anti-parallel
Strand 9	B	335	337	parallel
Strand 10	B	368	371	parallel
Strand 11	B	421	423	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	905	906	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	428	429	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	480	first strand
Strand 2	B	520	526	anti-parallel
Strand 3	B	549	553	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	783	first strand
Strand 2	B	646	651	parallel
Strand 3	B	561	565	parallel
Strand 4	B	826	829	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	717	first strand
Strand 2	B	723	727	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	747	749	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	149	154	parallel
Strand 3	A	225	232	parallel
Strand 4	A	270	278	anti-parallel
Strand 5	A	35	43	anti-parallel
Strand 6	A	291	300	anti-parallel
Strand 7	A	449	457	anti-parallel
Strand 8	A	438	444	anti-parallel
Strand 9	A	335	337	parallel
Strand 10	A	368	371	parallel
Strand 11	A	421	423	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	905	906	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	428	429	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	480	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	549	553	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	783	first strand
Strand 2	A	646	651	parallel
Strand 3	A	561	565	parallel
Strand 4	A	826	829	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	717	first strand
Strand 2	A	723	727	anti-parallel
Strand 3	A	690	694	anti-parallel
Strand 4	A	747	749	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	82	87	anti-parallel
Strand 4	C	20	21	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	82	87	anti-parallel
Strand 4	C	72	77	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	114	118	parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	62	64	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	114	118	parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	109	110	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	144	152	anti-parallel
Strand 3	C	183	190	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	202	207	anti-parallel
Strand 3	C	212	217	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	86	88	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	105	111	anti-parallel
Strand 4	D	124	126	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	151	161	anti-parallel
Strand 3	D	199	204	anti-parallel
Strand 4	D	182	183	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	151	161	anti-parallel
Strand 3	D	195	197	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	216	219	anti-parallel
Strand 3	D	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M7E