Analysis of interatomic Contacts of Structural Units in PDB entry:
7M7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M7F entry

There are 6 chains in PDB entry 7M7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLY 1490
A	MET 1	ARG 1390
C	GLU 3	PRO 220
D	ASP 17	PHE 231
E	GLU 3	PRO 220
F	ASP 17	PHE 231

There are 98 helices in PDB entry 7M7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	12	17	Right-handed alpha
Helix 2	AA2	B	19	24	Right-handed alpha
Helix 3	AA3	B	26	31	Right-handed alpha
Helix 4	AA4	B	50	59	Right-handed alpha
Helix 5	AA5	B	112	119	Right-handed alpha
Helix 6	AA6	B	120	136	Right-handed alpha
Helix 7	AA7	B	163	167	Right-handed 310
Helix 8	AA8	B	174	179	Right-handed alpha
Helix 9	AA9	B	182	192	Right-handed alpha
Helix 10	AB1	B	203	205	Right-handed 310
Helix 11	AB2	B	206	221	Right-handed alpha
Helix 12	AB3	B	238	244	Right-handed alpha
Helix 13	AB4	B	280	286	Right-handed alpha
Helix 14	AB5	B	312	328	Right-handed alpha
Helix 15	AB6	B	330	334	Right-handed 310
Helix 16	AB7	B	346	359	Right-handed alpha
Helix 17	AB8	B	360	363	Right-handed 310
Helix 18	AB9	B	371	377	Right-handed alpha
Helix 19	AC1	B	379	383	Right-handed 310
Helix 20	AC2	B	384	398	Right-handed alpha
Helix 21	AC3	B	481	486	Right-handed alpha
Helix 22	AC4	B	489	499	Right-handed alpha
Helix 23	AC5	B	503	513	Right-handed alpha
Helix 24	AC6	B	572	580	Right-handed alpha
Helix 25	AC7	B	582	595	Right-handed alpha
Helix 26	AC8	B	601	608	Right-handed alpha
Helix 27	AC9	B	623	645	Right-handed alpha
Helix 28	AD1	B	657	666	Right-handed alpha
Helix 29	AD2	B	670	686	Right-handed alpha
Helix 30	AD3	B	700	708	Right-handed alpha
Helix 31	AD4	B	731	740	Right-handed alpha
Helix 32	AD5	B	741	743	Right-handed 310
Helix 33	AD6	B	759	762	Right-handed 310
Helix 34	AD7	B	763	770	Right-handed alpha
Helix 35	AD8	B	799	807	Right-handed alpha
Helix 36	AD9	B	812	824	Right-handed alpha
Helix 37	AE1	B	837	847	Right-handed alpha
Helix 38	AE2	B	864	878	Right-handed alpha
Helix 39	AE3	B	883	888	Right-handed alpha
Helix 40	AE4	B	1409	1428	Right-handed alpha
Helix 41	AE5	B	1448	1463	Right-handed alpha
Helix 42	AE6	B	1470	1475	Right-handed alpha
Helix 43	AE7	B	1477	1488	Right-handed alpha
Helix 44	AE8	A	8	21	Right-handed alpha
Helix 45	AE9	A	54	59	Right-handed alpha
Helix 46	AF1	A	114	119	Right-handed alpha
Helix 47	AF2	A	126	136	Right-handed alpha
Helix 48	AF3	A	172	176	Right-handed 310
Helix 49	AF4	A	181	192	Right-handed alpha
Helix 50	AF5	A	203	205	Right-handed 310
Helix 51	AF6	A	206	220	Right-handed alpha
Helix 52	AF7	A	243	248	Right-handed 310
Helix 53	AF8	A	347	354	Right-handed alpha
Helix 54	AF9	A	372	377	Right-handed alpha
Helix 55	AG1	A	379	383	Right-handed 310
Helix 56	AG2	A	389	394	Right-handed alpha
Helix 57	AG3	A	481	489	Right-handed alpha
Helix 58	AG4	A	493	498	Right-handed alpha
Helix 59	AG5	A	503	508	Right-handed alpha
Helix 60	AG6	A	528	541	Right-handed alpha
Helix 61	AG7	A	575	580	Right-handed alpha
Helix 62	AG8	A	580	595	Right-handed alpha
Helix 63	AG9	A	596	598	Right-handed 310
Helix 64	AH1	A	602	608	Right-handed alpha
Helix 65	AH2	A	609	614	Right-handed alpha
Helix 66	AH3	A	623	645	Right-handed alpha
Helix 67	AH4	A	657	667	Right-handed alpha
Helix 68	AH5	A	670	686	Right-handed alpha
Helix 69	AH6	A	700	708	Right-handed alpha
Helix 70	AH7	A	799	809	Right-handed alpha
Helix 71	AH8	A	812	823	Right-handed alpha
Helix 72	AH9	A	836	845	Right-handed alpha
Helix 73	AI1	A	864	879	Right-handed alpha
Helix 74	AI2	A	883	888	Right-handed alpha
Helix 75	AI3	A	921	927	Right-handed alpha
Helix 76	AI4	A	959	967	Right-handed alpha
Helix 77	AI5	A	988	998	Right-handed alpha
Helix 78	AI6	A	1021	1038	Right-handed alpha
Helix 79	AI7	A	1061	1078	Right-handed alpha
Helix 80	AI8	A	1093	1105	Right-handed alpha
Helix 81	AI9	A	1150	1164	Right-handed alpha
Helix 82	AJ1	A	1174	1178	Right-handed 310
Helix 83	AJ2	A	1180	1192	Right-handed alpha
Helix 84	AJ3	A	1204	1214	Right-handed alpha
Helix 85	AJ4	A	1240	1263	Right-handed alpha
Helix 86	AJ5	A	1288	1303	Right-handed alpha
Helix 87	AJ6	A	1325	1333	Right-handed alpha
Helix 88	AJ7	A	1340	1354	Right-handed alpha
Helix 89	AJ8	A	1365	1374	Right-handed alpha
Helix 90	AJ9	A	1379	1383	Right-handed 310
Helix 91	AK1	A	1385	1389	Right-handed 310
Helix 92	AK2	C	55	59	Right-handed 310
Helix 93	AK3	C	91	95	Right-handed 310
Helix 94	AK4	D	143	150	Right-handed alpha
Helix 95	AK5	D	205	209	Right-handed 310
Helix 96	AK6	E	91	95	Right-handed 310
Helix 97	AK7	F	143	148	Right-handed alpha
Helix 98	AK8	F	205	209	Right-handed 310

There are 36 sheets in PDB entry 7M7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	437	443	parallel
Strand 3	B	448	456	anti-parallel
Strand 4	B	292	301	anti-parallel
Strand 5	B	35	43	anti-parallel
Strand 6	B	271	279	anti-parallel
Strand 7	B	226	233	anti-parallel
Strand 8	B	149	154	parallel
Strand 9	B	198	202	parallel
Strand 10	A	199	202	anti-parallel
Strand 11	A	149	154	parallel
Strand 12	A	226	231	parallel
Strand 13	A	274	279	anti-parallel
Strand 14	A	35	41	anti-parallel
Strand 15	A	292	301	anti-parallel
Strand 16	A	448	456	anti-parallel
Strand 17	A	437	442	anti-parallel
Strand 18	A	334	338	parallel
Strand 19	A	367	370	parallel
Strand 20	A	420	422	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	906	907	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	420	422	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	427	428	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	521	524	anti-parallel
Strand 3	B	548	550	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	654	first strand
Strand 2	B	558	562	parallel
Strand 3	B	827	830	parallel
Strand 4	B	853	856	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	717	first strand
Strand 2	B	723	728	anti-parallel
Strand 3	B	692	697	anti-parallel
Strand 4	B	746	748	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	520	523	anti-parallel
Strand 3	A	548	550	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	654	first strand
Strand 2	A	558	562	parallel
Strand 3	A	828	830	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	697	first strand
Strand 2	A	722	727	anti-parallel
Strand 3	A	712	719	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	980	first strand
Strand 2	A	948	953	parallel
Strand 3	A	1002	1008	parallel
Strand 4	A	1043	1048	parallel
Strand 5	A	1082	1088	parallel
Strand 6	A	1112	1116	parallel
Strand 7	A	1119	1127	anti-parallel
Strand 8	A	929	936	anti-parallel
Strand 9	A	1359	1361	anti-parallel
Strand 10	A	1311	1314	parallel
Strand 11	A	1272	1275	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1145	1146	first strand
Strand 2	A	1225	1226	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1171	1172	first strand
Strand 2	A	1198	1199	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1336	1337	first strand
Strand 2	A	1363	1364	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	19	27	anti-parallel
Strand 3	C	82	88	anti-parallel
Strand 4	C	72	77	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	114	118	parallel
Strand 3	C	96	98	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	62	64	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	144	148	anti-parallel
Strand 3	C	186	190	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	212	218	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	91	96	anti-parallel
Strand 4	D	83	87	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	127	128	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	65	70	anti-parallel
Strand 3	D	54	59	anti-parallel
Strand 4	D	106	111	anti-parallel
Strand 5	D	124	125	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	140	first strand
Strand 2	D	152	161	anti-parallel
Strand 3	D	195	203	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	216	218	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	20	27	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	72	77	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	114	118	parallel
Strand 3	E	96	98	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	47	53	anti-parallel
Strand 3	E	62	64	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	144	148	anti-parallel
Strand 3	E	186	190	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	161	first strand
Strand 2	E	201	206	anti-parallel
Strand 3	E	213	218	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	177	first strand
Strand 2	E	183	184	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	35	41	anti-parallel
Strand 3	F	91	96	anti-parallel
Strand 4	F	83	87	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	29	first strand
Strand 2	F	124	128	parallel
Strand 3	F	105	111	anti-parallel
Strand 4	F	54	59	anti-parallel
Strand 5	F	66	70	anti-parallel
Strand 6	F	74	75	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	51	52	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	155	161	anti-parallel
Strand 3	F	195	200	anti-parallel
Strand 4	F	185	186	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	170	first strand
Strand 2	F	216	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M7F