Analysis of interatomic Contacts of Structural Units in PDB entry:
7M7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M7J entry

There are 6 chains in PDB entry 7M7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	PRO 912
A	MET 1	ARG 1390
C	GLU 3	PRO 220
D	ASP 17	PHE 231
E	GLU 3	PRO 220
F	ASP 17	PHE 231

There are100 helices in PDB entry 7M7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	32	Right-handed alpha
Helix 2	AA2	B	50	60	Right-handed alpha
Helix 3	AA3	B	112	119	Right-handed alpha
Helix 4	AA4	B	120	137	Right-handed alpha
Helix 5	AA5	B	140	144	Right-handed 310
Helix 6	AA6	B	173	179	Right-handed alpha
Helix 7	AA7	B	182	192	Right-handed alpha
Helix 8	AA8	B	203	205	Right-handed 310
Helix 9	AA9	B	206	222	Right-handed alpha
Helix 10	AB1	B	238	244	Right-handed alpha
Helix 11	AB2	B	280	287	Right-handed alpha
Helix 12	AB3	B	312	328	Right-handed alpha
Helix 13	AB4	B	330	334	Right-handed 310
Helix 14	AB5	B	346	359	Right-handed alpha
Helix 15	AB6	B	360	363	Right-handed 310
Helix 16	AB7	B	371	376	Right-handed alpha
Helix 17	AB8	B	379	383	Right-handed 310
Helix 18	AB9	B	384	398	Right-handed alpha
Helix 19	AC1	B	481	499	Right-handed alpha
Helix 20	AC2	B	503	513	Right-handed alpha
Helix 21	AC3	B	528	542	Right-handed alpha
Helix 22	AC4	B	580	594	Right-handed alpha
Helix 23	AC5	B	602	607	Right-handed alpha
Helix 24	AC6	B	609	613	Right-handed 310
Helix 25	AC7	B	623	644	Right-handed alpha
Helix 26	AC8	B	658	664	Right-handed alpha
Helix 27	AC9	B	665	667	Right-handed 310
Helix 28	AD1	B	670	688	Right-handed alpha
Helix 29	AD2	B	700	705	Right-handed alpha
Helix 30	AD3	B	731	741	Right-handed alpha
Helix 31	AD4	B	759	763	Right-handed 310
Helix 32	AD5	B	801	808	Right-handed alpha
Helix 33	AD6	B	812	823	Right-handed alpha
Helix 34	AD7	B	837	847	Right-handed alpha
Helix 35	AD8	B	868	877	Right-handed alpha
Helix 36	AD9	B	883	888	Right-handed alpha
Helix 37	AE1	A	9	32	Right-handed alpha
Helix 38	AE2	A	52	60	Right-handed alpha
Helix 39	AE3	A	98	103	Right-handed 310
Helix 40	AE4	A	112	118	Right-handed alpha
Helix 41	AE5	A	120	138	Right-handed alpha
Helix 42	AE6	A	140	144	Right-handed 310
Helix 43	AE7	A	163	167	Right-handed 310
Helix 44	AE8	A	180	192	Right-handed alpha
Helix 45	AE9	A	203	205	Right-handed 310
Helix 46	AF1	A	206	222	Right-handed alpha
Helix 47	AF2	A	239	245	Right-handed alpha
Helix 48	AF3	A	280	284	Right-handed alpha
Helix 49	AF4	A	315	328	Right-handed alpha
Helix 50	AF5	A	347	359	Right-handed alpha
Helix 51	AF6	A	371	377	Right-handed alpha
Helix 52	AF7	A	379	383	Right-handed 310
Helix 53	AF8	A	386	398	Right-handed alpha
Helix 54	AF9	A	481	498	Right-handed alpha
Helix 55	AG1	A	503	511	Right-handed alpha
Helix 56	AG2	A	528	541	Right-handed alpha
Helix 57	AG3	A	576	579	Right-handed 310
Helix 58	AG4	A	580	593	Right-handed alpha
Helix 59	AG5	A	601	608	Right-handed alpha
Helix 60	AG6	A	611	615	Right-handed 310
Helix 61	AG7	A	623	644	Right-handed alpha
Helix 62	AG8	A	659	667	Right-handed alpha
Helix 63	AG9	A	671	688	Right-handed alpha
Helix 64	AH1	A	700	705	Right-handed alpha
Helix 65	AH2	A	731	741	Right-handed alpha
Helix 66	AH3	A	759	763	Right-handed 310
Helix 67	AH4	A	801	808	Right-handed alpha
Helix 68	AH5	A	812	823	Right-handed alpha
Helix 69	AH6	A	837	847	Right-handed alpha
Helix 70	AH7	A	867	879	Right-handed alpha
Helix 71	AH8	A	883	892	Right-handed alpha
Helix 72	AH9	A	921	927	Right-handed alpha
Helix 73	AI1	A	959	968	Right-handed alpha
Helix 74	AI2	A	969	973	Right-handed 310
Helix 75	AI3	A	988	998	Right-handed alpha
Helix 76	AI4	A	1007	1009	Right-handed 310
Helix 77	AI5	A	1017	1020	Right-handed 310
Helix 78	AI6	A	1021	1037	Right-handed alpha
Helix 79	AI7	A	1063	1075	Right-handed alpha
Helix 80	AI8	A	1093	1106	Right-handed alpha
Helix 81	AI9	A	1150	1164	Right-handed alpha
Helix 82	AJ1	A	1174	1178	Right-handed 310
Helix 83	AJ2	A	1180	1192	Right-handed alpha
Helix 84	AJ3	A	1204	1214	Right-handed alpha
Helix 85	AJ4	A	1240	1248	Right-handed alpha
Helix 86	AJ5	A	1248	1262	Right-handed alpha
Helix 87	AJ6	A	1276	1280	Right-handed alpha
Helix 88	AJ7	A	1288	1305	Right-handed alpha
Helix 89	AJ8	A	1325	1334	Right-handed alpha
Helix 90	AJ9	A	1340	1355	Right-handed alpha
Helix 91	AK1	A	1365	1374	Right-handed alpha
Helix 92	AK2	A	1386	1390	Right-handed 310
Helix 93	AK3	C	66	69	Right-handed 310
Helix 94	AK4	C	91	95	Right-handed 310
Helix 95	AK5	D	143	148	Right-handed alpha
Helix 96	AK6	D	205	209	Right-handed 310
Helix 97	AK7	E	66	69	Right-handed 310
Helix 98	AK8	E	91	95	Right-handed 310
Helix 99	AK9	F	143	148	Right-handed alpha
Helix 100	AL1	F	205	210	Right-handed 310

There are 30 sheets in PDB entry 7M7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	201	first strand
Strand 2	B	149	154	parallel
Strand 3	B	226	233	parallel
Strand 4	B	271	279	anti-parallel
Strand 5	B	35	43	anti-parallel
Strand 6	B	292	301	anti-parallel
Strand 7	B	448	456	anti-parallel
Strand 8	B	437	443	anti-parallel
Strand 9	B	336	338	parallel
Strand 10	B	367	370	parallel
Strand 11	B	420	422	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	478	first strand
Strand 2	B	520	522	anti-parallel
Strand 3	B	550	551	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	652	first strand
Strand 2	B	556	560	parallel
Strand 3	B	827	828	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	697	first strand
Strand 2	B	723	727	anti-parallel
Strand 3	B	714	716	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	149	154	parallel
Strand 3	A	226	231	parallel
Strand 4	A	274	279	anti-parallel
Strand 5	A	35	41	anti-parallel
Strand 6	A	292	301	anti-parallel
Strand 7	A	448	456	anti-parallel
Strand 8	A	437	443	anti-parallel
Strand 9	A	336	338	parallel
Strand 10	A	367	370	parallel
Strand 11	A	420	422	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	520	521	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	648	651	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	697	first strand
Strand 2	A	723	727	anti-parallel
Strand 3	A	714	716	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	930	935	first strand
Strand 2	A	1119	1127	anti-parallel
Strand 3	A	1112	1116	anti-parallel
Strand 4	A	1082	1088	parallel
Strand 5	A	1043	1048	parallel
Strand 6	A	1002	1005	parallel
Strand 7	A	949	953	parallel
Strand 8	A	978	980	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1195	1199	first strand
Strand 2	A	1167	1172	parallel
Strand 3	A	1142	1146	parallel
Strand 4	A	1221	1226	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1271	1275	first strand
Strand 2	A	1310	1314	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	20	25	anti-parallel
Strand 3	C	82	87	anti-parallel
Strand 4	C	73	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	114	118	parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	47	53	anti-parallel
Strand 6	C	62	64	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	144	152	anti-parallel
Strand 3	C	183	190	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	202	207	anti-parallel
Strand 3	C	212	217	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	92	96	anti-parallel
Strand 3	D	83	87	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	66	70	anti-parallel
Strand 3	D	54	59	anti-parallel
Strand 4	D	105	111	anti-parallel
Strand 5	D	124	126	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	152	161	anti-parallel
Strand 3	D	199	203	anti-parallel
Strand 4	D	181	183	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	152	161	anti-parallel
Strand 3	D	195	197	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	216	217	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	73	75	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	114	118	parallel
Strand 3	E	96	102	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	47	53	anti-parallel
Strand 6	E	62	64	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	144	152	anti-parallel
Strand 3	E	183	190	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	161	first strand
Strand 2	E	202	207	anti-parallel
Strand 3	E	212	217	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	92	96	anti-parallel
Strand 3	F	83	87	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	F	66	70	anti-parallel
Strand 3	F	54	59	anti-parallel
Strand 4	F	105	111	anti-parallel
Strand 5	F	124	126	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	152	161	anti-parallel
Strand 3	F	199	203	anti-parallel
Strand 4	F	181	183	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	152	161	anti-parallel
Strand 3	F	195	197	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M7J