Analysis of interatomic Contacts of Structural Units in PDB entry:
7M8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M8H entry

There are 4 chains in PDB entry 7M8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	HIS 297
B	ARG 4	HIS 297
C	ARG 4	HIS 297
D	ARG 4	HIS 297

There are 52 helices in PDB entry 7M8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	34	Right-handed alpha
Helix 2	AA2	A	51	64	Right-handed alpha
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	123	130	Right-handed alpha
Helix 5	AA5	A	133	135	Right-handed 310
Helix 6	AA6	A	136	144	Right-handed alpha
Helix 7	AA7	A	145	148	Right-handed 310
Helix 8	AA8	A	162	178	Right-handed alpha
Helix 9	AA9	A	194	198	Right-handed 310
Helix 10	AB1	A	203	207	Right-handed 310
Helix 11	AB2	A	208	226	Right-handed alpha
Helix 12	AB3	A	228	240	Right-handed alpha
Helix 13	AB4	A	245	262	Right-handed alpha
Helix 14	AB5	B	20	34	Right-handed alpha
Helix 15	AB6	B	51	64	Right-handed alpha
Helix 16	AB7	B	106	116	Right-handed alpha
Helix 17	AB8	B	123	130	Right-handed alpha
Helix 18	AB9	B	133	135	Right-handed 310
Helix 19	AC1	B	136	144	Right-handed alpha
Helix 20	AC2	B	145	148	Right-handed 310
Helix 21	AC3	B	162	178	Right-handed alpha
Helix 22	AC4	B	194	198	Right-handed 310
Helix 23	AC5	B	203	207	Right-handed 310
Helix 24	AC6	B	208	226	Right-handed alpha
Helix 25	AC7	B	228	240	Right-handed alpha
Helix 26	AC8	B	245	262	Right-handed alpha
Helix 27	AC9	C	20	34	Right-handed alpha
Helix 28	AD1	C	51	64	Right-handed alpha
Helix 29	AD2	C	106	116	Right-handed alpha
Helix 30	AD3	C	123	130	Right-handed alpha
Helix 31	AD4	C	133	135	Right-handed 310
Helix 32	AD5	C	136	144	Right-handed alpha
Helix 33	AD6	C	145	148	Right-handed 310
Helix 34	AD7	C	162	178	Right-handed alpha
Helix 35	AD8	C	194	198	Right-handed 310
Helix 36	AD9	C	203	207	Right-handed 310
Helix 37	AE1	C	208	226	Right-handed alpha
Helix 38	AE2	C	228	240	Right-handed alpha
Helix 39	AE3	C	245	262	Right-handed alpha
Helix 40	AE4	D	20	34	Right-handed alpha
Helix 41	AE5	D	51	64	Right-handed alpha
Helix 42	AE6	D	106	116	Right-handed alpha
Helix 43	AE7	D	123	130	Right-handed alpha
Helix 44	AE8	D	133	135	Right-handed 310
Helix 45	AE9	D	136	144	Right-handed alpha
Helix 46	AF1	D	145	148	Right-handed 310
Helix 47	AF2	D	162	178	Right-handed alpha
Helix 48	AF3	D	194	198	Right-handed 310
Helix 49	AF4	D	203	207	Right-handed 310
Helix 50	AF5	D	208	226	Right-handed alpha
Helix 51	AF6	D	228	240	Right-handed alpha
Helix 52	AF7	D	245	262	Right-handed alpha

There are 12 sheets in PDB entry 7M8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	95	96	parallel
Strand 3	A	103	104	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	88	90	parallel
Strand 3	A	152	158	anti-parallel
Strand 4	A	73	79	parallel
Strand 5	A	182	187	parallel
Strand 6	A	44	47	parallel
Strand 7	A	286	296	anti-parallel
Strand 8	A	192	193	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	88	90	parallel
Strand 3	A	152	158	anti-parallel
Strand 4	A	73	79	parallel
Strand 5	A	182	187	parallel
Strand 6	A	44	47	parallel
Strand 7	A	286	296	anti-parallel
Strand 8	A	266	275	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	95	96	parallel
Strand 3	B	103	104	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	88	90	parallel
Strand 3	B	152	158	anti-parallel
Strand 4	B	73	79	parallel
Strand 5	B	182	187	parallel
Strand 6	B	44	47	parallel
Strand 7	B	286	297	anti-parallel
Strand 8	B	192	193	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	88	90	parallel
Strand 3	B	152	158	anti-parallel
Strand 4	B	73	79	parallel
Strand 5	B	182	187	parallel
Strand 6	B	44	47	parallel
Strand 7	B	286	297	anti-parallel
Strand 8	B	265	275	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	95	96	parallel
Strand 3	C	103	104	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	88	90	parallel
Strand 3	C	152	158	anti-parallel
Strand 4	C	73	79	parallel
Strand 5	C	182	187	parallel
Strand 6	C	44	47	parallel
Strand 7	C	286	297	anti-parallel
Strand 8	C	192	193	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	88	90	parallel
Strand 3	C	152	158	anti-parallel
Strand 4	C	73	79	parallel
Strand 5	C	182	187	parallel
Strand 6	C	44	47	parallel
Strand 7	C	286	297	anti-parallel
Strand 8	C	265	275	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	95	96	parallel
Strand 3	D	103	104	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	88	90	parallel
Strand 3	D	152	158	anti-parallel
Strand 4	D	73	79	parallel
Strand 5	D	182	187	parallel
Strand 6	D	44	47	parallel
Strand 7	D	286	297	anti-parallel
Strand 8	D	192	193	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	88	90	parallel
Strand 3	D	152	158	anti-parallel
Strand 4	D	73	79	parallel
Strand 5	D	182	187	parallel
Strand 6	D	44	47	parallel
Strand 7	D	286	297	anti-parallel
Strand 8	D	265	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M8H