Analysis of interatomic Contacts of Structural Units in PDB entry:
7M8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M8I entry

There are 3 chains in PDB entry 7M8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 66	ASN 1503
B	LYS 66	HIS 1504
C	LEU 90	ILE 1502

There are 82 helices in PDB entry 7M8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	95	Right-handed alpha
Helix 2	AA2	A	120	125	Right-handed alpha
Helix 3	AA3	A	131	139	Right-handed alpha
Helix 4	AA4	A	152	154	Right-handed 310
Helix 5	AA5	A	157	161	Right-handed 310
Helix 6	AA6	A	1037	1041	Right-handed 310
Helix 7	AA7	A	1047	1059	Right-handed alpha
Helix 8	AA8	A	1063	1076	Right-handed alpha
Helix 9	AA9	A	1093	1103	Right-handed alpha
Helix 10	AB1	A	1113	1123	Right-handed alpha
Helix 11	AB2	A	1128	1133	Right-handed 310
Helix 12	AB3	A	1134	1143	Right-handed alpha
Helix 13	AB4	A	1144	1149	Right-handed alpha
Helix 14	AB5	A	1150	1179	Right-handed alpha
Helix 15	AB6	A	1188	1206	Right-handed alpha
Helix 16	AB7	A	1217	1236	Right-handed alpha
Helix 17	AB8	A	1241	1249	Right-handed alpha
Helix 18	AB9	A	1249	1281	Right-handed alpha
Helix 19	AC1	A	1288	1297	Right-handed alpha
Helix 20	AC2	A	1300	1315	Right-handed alpha
Helix 21	AC3	A	1316	1333	Right-handed alpha
Helix 22	AC4	A	1333	1354	Right-handed alpha
Helix 23	AC5	A	1357	1362	Right-handed alpha
Helix 24	AC6	A	1362	1376	Right-handed alpha
Helix 25	AC7	A	1407	1412	Right-handed alpha
Helix 26	AC8	A	1426	1434	Right-handed alpha
Helix 27	AC9	A	1445	1449	Right-handed 310
Helix 28	AD1	A	1452	1469	Right-handed alpha
Helix 29	AD2	B	88	96	Right-handed alpha
Helix 30	AD3	B	120	125	Right-handed alpha
Helix 31	AD4	B	131	139	Right-handed alpha
Helix 32	AD5	B	157	161	Right-handed 310
Helix 33	AD6	B	1037	1041	Right-handed 310
Helix 34	AD7	B	1047	1059	Right-handed alpha
Helix 35	AD8	B	1063	1076	Right-handed alpha
Helix 36	AD9	B	1093	1103	Right-handed alpha
Helix 37	AE1	B	1113	1123	Right-handed alpha
Helix 38	AE2	B	1128	1133	Right-handed 310
Helix 39	AE3	B	1134	1143	Right-handed alpha
Helix 40	AE4	B	1144	1149	Right-handed alpha
Helix 41	AE5	B	1150	1179	Right-handed alpha
Helix 42	AE6	B	1188	1206	Right-handed alpha
Helix 43	AE7	B	1217	1236	Right-handed alpha
Helix 44	AE8	B	1241	1249	Right-handed alpha
Helix 45	AE9	B	1249	1281	Right-handed alpha
Helix 46	AF1	B	1288	1297	Right-handed alpha
Helix 47	AF2	B	1300	1315	Right-handed alpha
Helix 48	AF3	B	1316	1333	Right-handed alpha
Helix 49	AF4	B	1333	1354	Right-handed alpha
Helix 50	AF5	B	1357	1362	Right-handed alpha
Helix 51	AF6	B	1362	1376	Right-handed alpha
Helix 52	AF7	B	1407	1412	Right-handed alpha
Helix 53	AF8	B	1426	1431	Right-handed alpha
Helix 54	AF9	B	1445	1449	Right-handed 310
Helix 55	AG1	B	1452	1469	Right-handed alpha
Helix 56	AG2	C	91	97	Right-handed alpha
Helix 57	AG3	C	121	125	Right-handed alpha
Helix 58	AG4	C	132	139	Right-handed alpha
Helix 59	AG5	C	1037	1041	Right-handed 310
Helix 60	AG6	C	1047	1059	Right-handed alpha
Helix 61	AG7	C	1063	1076	Right-handed alpha
Helix 62	AG8	C	1093	1103	Right-handed alpha
Helix 63	AG9	C	1113	1123	Right-handed alpha
Helix 64	AH1	C	1128	1133	Right-handed 310
Helix 65	AH2	C	1134	1143	Right-handed alpha
Helix 66	AH3	C	1144	1149	Right-handed alpha
Helix 67	AH4	C	1150	1177	Right-handed alpha
Helix 68	AH5	C	1188	1206	Right-handed alpha
Helix 69	AH6	C	1217	1239	Right-handed alpha
Helix 70	AH7	C	1241	1249	Right-handed alpha
Helix 71	AH8	C	1249	1281	Right-handed alpha
Helix 72	AH9	C	1288	1297	Right-handed alpha
Helix 73	AI1	C	1300	1315	Right-handed alpha
Helix 74	AI2	C	1316	1333	Right-handed alpha
Helix 75	AI3	C	1333	1347	Right-handed alpha
Helix 76	AI4	C	1347	1354	Right-handed alpha
Helix 77	AI5	C	1357	1362	Right-handed alpha
Helix 78	AI6	C	1362	1376	Right-handed alpha
Helix 79	AI7	C	1406	1412	Right-handed alpha
Helix 80	AI8	C	1426	1431	Right-handed alpha
Helix 81	AI9	C	1445	1449	Right-handed 310
Helix 82	AJ1	C	1452	1469	Right-handed alpha

There are 17 sheets in PDB entry 7M8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	163	166	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	148	150	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1078	1080	first strand
Strand 2	A	1088	1091	anti-parallel
Strand 3	A	1402	1406	parallel
Strand 4	A	1381	1385	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1183	1186	first strand
Strand 2	A	1497	1501	anti-parallel
Strand 3	A	1471	1474	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1390	1392	first strand
Strand 2	A	1395	1397	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1483	1485	first strand
Strand 2	A	1489	1491	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	163	166	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	148	150	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1078	1080	first strand
Strand 2	B	1088	1091	anti-parallel
Strand 3	B	1402	1406	parallel
Strand 4	B	1381	1385	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1183	1186	first strand
Strand 2	B	1497	1501	anti-parallel
Strand 3	B	1471	1474	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1390	1392	first strand
Strand 2	B	1395	1397	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1483	1485	first strand
Strand 2	B	1489	1491	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	149	150	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1078	1080	first strand
Strand 2	C	1088	1091	anti-parallel
Strand 3	C	1402	1405	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1183	1186	first strand
Strand 2	C	1497	1501	anti-parallel
Strand 3	C	1471	1474	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1390	1392	first strand
Strand 2	C	1395	1397	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1483	1485	first strand
Strand 2	C	1489	1491	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M8I