Analysis of interatomic Contacts of Structural Units in PDB entry:
7M8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M8R entry

There are 10 chains in PDB entry 7M8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	PHE 526
B	PRO 4	ASN 395
C	ALA 2	ALA 169
D	ALA 4	PHE 75
D	ILE 78	ARG 133
E	ASP 12	PHE 526
F	PRO 4	ASN 395
G	ALA 2	ALA 169
H	SER 3	PHE 75
H	ILE 78	ILE 138

There are135 helices in PDB entry 7M8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	31	36	Right-handed 310
Helix 3	AA3	A	63	84	Right-handed alpha
Helix 4	AA4	A	84	89	Right-handed alpha
Helix 5	AA5	A	90	94	Right-handed 310
Helix 6	AA6	A	96	128	Right-handed alpha
Helix 7	AA7	A	130	162	Right-handed alpha
Helix 8	AA8	A	170	175	Right-handed alpha
Helix 9	AA9	A	178	188	Right-handed alpha
Helix 10	AB1	A	189	194	Right-handed alpha
Helix 11	AB2	A	199	204	Right-handed alpha
Helix 12	AB3	A	207	212	Right-handed alpha
Helix 13	AB4	A	212	218	Right-handed alpha
Helix 14	AB5	A	218	227	Right-handed alpha
Helix 15	AB6	A	230	242	Right-handed alpha
Helix 16	AB7	A	242	260	Right-handed alpha
Helix 17	AB8	A	260	265	Right-handed alpha
Helix 18	AB9	A	266	293	Right-handed alpha
Helix 19	AC1	A	300	309	Right-handed alpha
Helix 20	AC2	A	311	317	Right-handed alpha
Helix 21	AC3	A	317	322	Right-handed alpha
Helix 22	AC4	A	323	325	Right-handed 310
Helix 23	AC5	A	331	353	Right-handed alpha
Helix 24	AC6	A	354	357	Right-handed 310
Helix 25	AC7	A	365	376	Right-handed alpha
Helix 26	AC8	A	378	393	Right-handed alpha
Helix 27	AC9	A	403	411	Right-handed alpha
Helix 28	AD1	A	450	460	Right-handed alpha
Helix 29	AD2	A	461	464	Right-handed 310
Helix 30	AD3	A	468	474	Right-handed alpha
Helix 31	AD4	A	477	485	Right-handed alpha
Helix 32	AD5	A	508	516	Right-handed alpha
Helix 33	AD6	B	16	27	Right-handed alpha
Helix 34	AD7	B	50	57	Right-handed alpha
Helix 35	AD8	B	87	91	Right-handed 310
Helix 36	AD9	B	97	101	Right-handed 310
Helix 37	AE1	B	108	134	Right-handed alpha
Helix 38	AE2	B	135	139	Right-handed 310
Helix 39	AE3	B	140	147	Right-handed alpha
Helix 40	AE4	B	147	173	Right-handed alpha
Helix 41	AE5	B	175	207	Right-handed alpha
Helix 42	AE6	B	214	224	Right-handed alpha
Helix 43	AE7	B	227	240	Right-handed alpha
Helix 44	AE8	B	243	253	Right-handed alpha
Helix 45	AE9	B	254	265	Right-handed alpha
Helix 46	AF1	B	267	273	Right-handed alpha
Helix 47	AF2	B	279	303	Right-handed alpha
Helix 48	AF3	B	312	339	Right-handed alpha
Helix 49	AF4	B	340	345	Right-handed 310
Helix 50	AF5	B	353	372	Right-handed alpha
Helix 51	AF6	B	381	391	Right-handed alpha
Helix 52	AF7	C	10	22	Right-handed alpha
Helix 53	AF8	C	25	41	Right-handed alpha
Helix 54	AF9	C	53	73	Right-handed alpha
Helix 55	AG1	C	74	81	Right-handed alpha
Helix 56	AG2	C	87	101	Right-handed alpha
Helix 57	AG3	C	104	120	Right-handed alpha
Helix 58	AG4	C	125	145	Right-handed alpha
Helix 59	AG5	C	152	161	Right-handed alpha
Helix 60	AG6	D	10	15	Right-handed 310
Helix 61	AG7	D	16	25	Right-handed alpha
Helix 62	AG8	D	26	31	Right-handed 310
Helix 63	AG9	D	45	55	Right-handed alpha
Helix 64	AH1	D	58	64	Right-handed alpha
Helix 65	AH2	D	88	96	Right-handed alpha
Helix 66	AH3	D	100	105	Right-handed alpha
Helix 67	AH4	E	24	30	Right-handed alpha
Helix 68	AH5	E	31	36	Right-handed 310
Helix 69	AH6	E	63	84	Right-handed alpha
Helix 70	AH7	E	84	90	Right-handed alpha
Helix 71	AH8	E	91	94	Right-handed 310
Helix 72	AH9	E	96	128	Right-handed alpha
Helix 73	AI1	E	130	162	Right-handed alpha
Helix 74	AI2	E	170	175	Right-handed alpha
Helix 75	AI3	E	178	188	Right-handed alpha
Helix 76	AI4	E	189	194	Right-handed alpha
Helix 77	AI5	E	199	204	Right-handed alpha
Helix 78	AI6	E	207	212	Right-handed alpha
Helix 79	AI7	E	212	218	Right-handed alpha
Helix 80	AI8	E	218	227	Right-handed alpha
Helix 81	AI9	E	230	241	Right-handed alpha
Helix 82	AJ1	E	242	260	Right-handed alpha
Helix 83	AJ2	E	260	265	Right-handed alpha
Helix 84	AJ3	E	266	293	Right-handed alpha
Helix 85	AJ4	E	300	309	Right-handed alpha
Helix 86	AJ5	E	311	317	Right-handed alpha
Helix 87	AJ6	E	317	322	Right-handed alpha
Helix 88	AJ7	E	323	325	Right-handed 310
Helix 89	AJ8	E	331	353	Right-handed alpha
Helix 90	AJ9	E	354	357	Right-handed 310
Helix 91	AK1	E	365	376	Right-handed alpha
Helix 92	AK2	E	378	394	Right-handed alpha
Helix 93	AK3	E	397	401	Right-handed 310
Helix 94	AK4	E	403	411	Right-handed alpha
Helix 95	AK5	E	450	460	Right-handed alpha
Helix 96	AK6	E	461	464	Right-handed 310
Helix 97	AK7	E	468	474	Right-handed alpha
Helix 98	AK8	E	477	485	Right-handed alpha
Helix 99	AK9	E	508	515	Right-handed alpha
Helix 100	AL1	F	16	27	Right-handed alpha
Helix 101	AL2	F	50	57	Right-handed alpha
Helix 102	AL3	F	87	91	Right-handed 310
Helix 103	AL4	F	108	134	Right-handed alpha
Helix 104	AL5	F	135	139	Right-handed 310
Helix 105	AL6	F	140	147	Right-handed alpha
Helix 106	AL7	F	147	165	Right-handed alpha
Helix 107	AL8	F	165	173	Right-handed alpha
Helix 108	AL9	F	175	207	Right-handed alpha
Helix 109	AM1	F	214	224	Right-handed alpha
Helix 110	AM2	F	227	240	Right-handed alpha
Helix 111	AM3	F	243	254	Right-handed alpha
Helix 112	AM4	F	254	265	Right-handed alpha
Helix 113	AM5	F	267	273	Right-handed alpha
Helix 114	AM6	F	279	303	Right-handed alpha
Helix 115	AM7	F	312	339	Right-handed alpha
Helix 116	AM8	F	340	345	Right-handed 310
Helix 117	AM9	F	353	372	Right-handed alpha
Helix 118	AN1	F	373	376	Right-handed 310
Helix 119	AN2	F	381	391	Right-handed alpha
Helix 120	AN3	G	10	22	Right-handed alpha
Helix 121	AN4	G	25	41	Right-handed alpha
Helix 122	AN5	G	53	73	Right-handed alpha
Helix 123	AN6	G	74	81	Right-handed alpha
Helix 124	AN7	G	87	101	Right-handed alpha
Helix 125	AN8	G	104	120	Right-handed alpha
Helix 126	AN9	G	125	145	Right-handed alpha
Helix 127	AO1	G	152	161	Right-handed alpha
Helix 128	AO2	H	3	7	Right-handed 310
Helix 129	AO3	H	10	15	Right-handed 310
Helix 130	AO4	H	16	25	Right-handed alpha
Helix 131	AO5	H	26	31	Right-handed 310
Helix 132	AO6	H	45	55	Right-handed alpha
Helix 133	AO7	H	58	64	Right-handed alpha
Helix 134	AO8	H	88	96	Right-handed alpha
Helix 135	AO9	H	100	105	Right-handed alpha

There are 8 sheets in PDB entry 7M8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	424	425	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	448	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	C	163	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	37	43	anti-parallel
Strand 4	D	108	112	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	121	125	anti-parallel
Strand 3	D	114	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	417	first strand
Strand 2	E	424	425	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	444	448	first strand
Strand 2	E	437	441	anti-parallel
Strand 3	G	163	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	72	first strand
Strand 2	H	75	81	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	108	112	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	87	first strand
Strand 2	H	121	125	anti-parallel
Strand 3	H	114	118	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M8R