Analysis of interatomic Contacts of Structural Units in PDB entry:
7M99

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M99 entry

There are 10 chains in PDB entry 7M99 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 19	TYR 275
B	GLU 19	TYR 275
C	GLU 19	TYR 275
D	GLU 19	TYR 275
E	GLU 19	TYR 275
F	GLU 19	TYR 275
G	GLU 19	TYR 275
H	GLU 19	TYR 275
I	T 1	T 21
J	A 1	A 21

There are104 helices in PDB entry 7M99. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	29	Right-handed alpha
Helix 2	AA2	A	36	53	Right-handed alpha
Helix 3	AA3	A	65	77	Right-handed alpha
Helix 4	AA4	A	101	113	Right-handed alpha
Helix 5	AA5	A	121	134	Right-handed alpha
Helix 6	AA6	A	150	152	Right-handed 310
Helix 7	AA7	A	153	164	Right-handed alpha
Helix 8	AA8	A	174	181	Right-handed alpha
Helix 9	AA9	A	183	190	Right-handed alpha
Helix 10	AB1	A	201	215	Right-handed alpha
Helix 11	AB2	A	226	238	Right-handed alpha
Helix 12	AB3	A	240	257	Right-handed alpha
Helix 13	AB4	A	264	273	Right-handed alpha
Helix 14	AB5	B	20	29	Right-handed alpha
Helix 15	AB6	B	36	53	Right-handed alpha
Helix 16	AB7	B	65	77	Right-handed alpha
Helix 17	AB8	B	101	113	Right-handed alpha
Helix 18	AB9	B	121	134	Right-handed alpha
Helix 19	AC1	B	150	152	Right-handed 310
Helix 20	AC2	B	153	164	Right-handed alpha
Helix 21	AC3	B	175	181	Right-handed alpha
Helix 22	AC4	B	183	188	Right-handed alpha
Helix 23	AC5	B	201	216	Right-handed alpha
Helix 24	AC6	B	226	238	Right-handed alpha
Helix 25	AC7	B	240	257	Right-handed alpha
Helix 26	AC8	B	264	273	Right-handed alpha
Helix 27	AC9	C	20	29	Right-handed alpha
Helix 28	AD1	C	36	53	Right-handed alpha
Helix 29	AD2	C	65	77	Right-handed alpha
Helix 30	AD3	C	101	113	Right-handed alpha
Helix 31	AD4	C	121	134	Right-handed alpha
Helix 32	AD5	C	150	152	Right-handed 310
Helix 33	AD6	C	153	164	Right-handed alpha
Helix 34	AD7	C	174	181	Right-handed alpha
Helix 35	AD8	C	183	190	Right-handed alpha
Helix 36	AD9	C	201	215	Right-handed alpha
Helix 37	AE1	C	226	238	Right-handed alpha
Helix 38	AE2	C	240	257	Right-handed alpha
Helix 39	AE3	C	264	273	Right-handed alpha
Helix 40	AE4	D	20	29	Right-handed alpha
Helix 41	AE5	D	36	53	Right-handed alpha
Helix 42	AE6	D	65	77	Right-handed alpha
Helix 43	AE7	D	101	113	Right-handed alpha
Helix 44	AE8	D	121	134	Right-handed alpha
Helix 45	AE9	D	150	152	Right-handed 310
Helix 46	AF1	D	153	164	Right-handed alpha
Helix 47	AF2	D	174	181	Right-handed alpha
Helix 48	AF3	D	183	190	Right-handed alpha
Helix 49	AF4	D	201	215	Right-handed alpha
Helix 50	AF5	D	226	238	Right-handed alpha
Helix 51	AF6	D	240	257	Right-handed alpha
Helix 52	AF7	D	264	273	Right-handed alpha
Helix 53	AF8	E	20	29	Right-handed alpha
Helix 54	AF9	E	36	53	Right-handed alpha
Helix 55	AG1	E	65	77	Right-handed alpha
Helix 56	AG2	E	101	113	Right-handed alpha
Helix 57	AG3	E	121	134	Right-handed alpha
Helix 58	AG4	E	150	152	Right-handed 310
Helix 59	AG5	E	153	164	Right-handed alpha
Helix 60	AG6	E	174	181	Right-handed alpha
Helix 61	AG7	E	183	190	Right-handed alpha
Helix 62	AG8	E	201	215	Right-handed alpha
Helix 63	AG9	E	226	238	Right-handed alpha
Helix 64	AH1	E	240	257	Right-handed alpha
Helix 65	AH2	E	264	273	Right-handed alpha
Helix 66	AH3	F	20	29	Right-handed alpha
Helix 67	AH4	F	36	53	Right-handed alpha
Helix 68	AH5	F	65	77	Right-handed alpha
Helix 69	AH6	F	101	113	Right-handed alpha
Helix 70	AH7	F	121	134	Right-handed alpha
Helix 71	AH8	F	150	152	Right-handed 310
Helix 72	AH9	F	153	164	Right-handed alpha
Helix 73	AI1	F	174	181	Right-handed alpha
Helix 74	AI2	F	183	190	Right-handed alpha
Helix 75	AI3	F	201	215	Right-handed alpha
Helix 76	AI4	F	226	238	Right-handed alpha
Helix 77	AI5	F	240	257	Right-handed alpha
Helix 78	AI6	F	264	273	Right-handed alpha
Helix 79	AI7	G	20	29	Right-handed alpha
Helix 80	AI8	G	36	53	Right-handed alpha
Helix 81	AI9	G	65	77	Right-handed alpha
Helix 82	AJ1	G	101	113	Right-handed alpha
Helix 83	AJ2	G	121	134	Right-handed alpha
Helix 84	AJ3	G	150	152	Right-handed 310
Helix 85	AJ4	G	153	164	Right-handed alpha
Helix 86	AJ5	G	174	181	Right-handed alpha
Helix 87	AJ6	G	183	190	Right-handed alpha
Helix 88	AJ7	G	201	215	Right-handed alpha
Helix 89	AJ8	G	226	238	Right-handed alpha
Helix 90	AJ9	G	240	257	Right-handed alpha
Helix 91	AK1	G	264	273	Right-handed alpha
Helix 92	AK2	H	20	29	Right-handed alpha
Helix 93	AK3	H	36	53	Right-handed alpha
Helix 94	AK4	H	65	77	Right-handed alpha
Helix 95	AK5	H	101	113	Right-handed alpha
Helix 96	AK6	H	121	134	Right-handed alpha
Helix 97	AK7	H	150	152	Right-handed 310
Helix 98	AK8	H	153	164	Right-handed alpha
Helix 99	AK9	H	174	181	Right-handed alpha
Helix 100	AL1	H	183	190	Right-handed alpha
Helix 101	AL2	H	201	215	Right-handed alpha
Helix 102	AL3	H	226	238	Right-handed alpha
Helix 103	AL4	H	240	257	Right-handed alpha
Helix 104	AL5	H	264	273	Right-handed alpha

There are 16 sheets in PDB entry 7M99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	57	60	parallel
Strand 3	A	193	195	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	140	143	parallel
Strand 3	A	167	168	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	57	60	parallel
Strand 3	B	193	195	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	140	143	parallel
Strand 3	B	167	168	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	57	59	parallel
Strand 3	C	193	195	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	140	143	parallel
Strand 3	C	167	168	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	57	59	parallel
Strand 3	D	193	195	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	140	143	parallel
Strand 3	D	167	168	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	57	59	parallel
Strand 3	E	193	195	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	140	143	parallel
Strand 3	E	167	168	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	172	first strand
Strand 2	F	57	59	parallel
Strand 3	F	193	195	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	140	143	parallel
Strand 3	F	167	168	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	172	first strand
Strand 2	G	57	60	parallel
Strand 3	G	193	196	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	140	143	parallel
Strand 3	G	167	168	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	172	first strand
Strand 2	H	57	59	parallel
Strand 3	H	193	195	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	94	first strand
Strand 2	H	140	143	parallel
Strand 3	H	167	168	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M99

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M99