Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MBF entry

There are 6 chains in PDB entry 7MBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	GLU 319
B	GLY 5	GLU 319
C	GLY 5	ASP 318
D	GLY 5	GLU 319
E	GLY 5	GLU 319
F	GLY 5	GLU 319

There are 98 helices in PDB entry 7MBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	46	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	77	81	Right-handed 310
Helix 5	AA5	A	88	92	Right-handed 310
Helix 6	AA6	A	93	95	Right-handed 310
Helix 7	AA7	A	96	108	Right-handed alpha
Helix 8	AA8	A	134	136	Right-handed 310
Helix 9	AA9	A	142	156	Right-handed alpha
Helix 10	AB1	A	168	176	Right-handed alpha
Helix 11	AB2	A	196	206	Right-handed alpha
Helix 12	AB3	A	231	241	Right-handed alpha
Helix 13	AB4	A	244	256	Right-handed alpha
Helix 14	AB5	A	266	274	Right-handed alpha
Helix 15	AB6	A	275	278	Right-handed 310
Helix 16	AB7	A	282	291	Right-handed alpha
Helix 17	AB8	A	300	304	Right-handed 310
Helix 18	AB9	A	312	318	Right-handed alpha
Helix 19	AC1	B	32	46	Right-handed alpha
Helix 20	AC2	B	53	57	Right-handed 310
Helix 21	AC3	B	58	72	Right-handed alpha
Helix 22	AC4	B	77	81	Right-handed 310
Helix 23	AC5	B	88	92	Right-handed 310
Helix 24	AC6	B	93	95	Right-handed 310
Helix 25	AC7	B	96	109	Right-handed alpha
Helix 26	AC8	B	142	156	Right-handed alpha
Helix 27	AC9	B	168	176	Right-handed alpha
Helix 28	AD1	B	196	206	Right-handed alpha
Helix 29	AD2	B	231	242	Right-handed alpha
Helix 30	AD3	B	244	256	Right-handed alpha
Helix 31	AD4	B	266	274	Right-handed alpha
Helix 32	AD5	B	275	279	Right-handed 310
Helix 33	AD6	B	282	291	Right-handed alpha
Helix 34	AD7	B	300	304	Right-handed 310
Helix 35	AD8	B	312	317	Right-handed alpha
Helix 36	AD9	C	32	46	Right-handed alpha
Helix 37	AE1	C	53	57	Right-handed 310
Helix 38	AE2	C	58	72	Right-handed alpha
Helix 39	AE3	C	77	81	Right-handed 310
Helix 40	AE4	C	88	92	Right-handed 310
Helix 41	AE5	C	93	95	Right-handed 310
Helix 42	AE6	C	96	108	Right-handed alpha
Helix 43	AE7	C	142	156	Right-handed alpha
Helix 44	AE8	C	168	177	Right-handed alpha
Helix 45	AE9	C	196	206	Right-handed alpha
Helix 46	AF1	C	231	242	Right-handed alpha
Helix 47	AF2	C	244	256	Right-handed alpha
Helix 48	AF3	C	266	274	Right-handed alpha
Helix 49	AF4	C	282	290	Right-handed alpha
Helix 50	AF5	D	32	46	Right-handed alpha
Helix 51	AF6	D	53	57	Right-handed 310
Helix 52	AF7	D	58	72	Right-handed alpha
Helix 53	AF8	D	77	81	Right-handed 310
Helix 54	AF9	D	88	92	Right-handed 310
Helix 55	AG1	D	93	95	Right-handed 310
Helix 56	AG2	D	96	109	Right-handed alpha
Helix 57	AG3	D	134	136	Right-handed 310
Helix 58	AG4	D	142	156	Right-handed alpha
Helix 59	AG5	D	168	178	Right-handed alpha
Helix 60	AG6	D	196	206	Right-handed alpha
Helix 61	AG7	D	231	241	Right-handed alpha
Helix 62	AG8	D	244	256	Right-handed alpha
Helix 63	AG9	D	266	274	Right-handed alpha
Helix 64	AH1	D	275	279	Right-handed 310
Helix 65	AH2	D	282	291	Right-handed alpha
Helix 66	AH3	D	300	304	Right-handed 310
Helix 67	AH4	D	312	318	Right-handed alpha
Helix 68	AH5	E	32	46	Right-handed alpha
Helix 69	AH6	E	53	57	Right-handed 310
Helix 70	AH7	E	58	72	Right-handed alpha
Helix 71	AH8	E	77	81	Right-handed 310
Helix 72	AH9	E	88	92	Right-handed 310
Helix 73	AI1	E	96	109	Right-handed alpha
Helix 74	AI2	E	142	156	Right-handed alpha
Helix 75	AI3	E	168	178	Right-handed alpha
Helix 76	AI4	E	196	206	Right-handed alpha
Helix 77	AI5	E	231	242	Right-handed alpha
Helix 78	AI6	E	244	256	Right-handed alpha
Helix 79	AI7	E	266	274	Right-handed alpha
Helix 80	AI8	E	275	279	Right-handed 310
Helix 81	AI9	E	282	291	Right-handed alpha
Helix 82	AJ1	E	300	304	Right-handed 310
Helix 83	AJ2	E	312	318	Right-handed alpha
Helix 84	AJ3	F	36	46	Right-handed alpha
Helix 85	AJ4	F	58	72	Right-handed alpha
Helix 86	AJ5	F	77	81	Right-handed 310
Helix 87	AJ6	F	88	92	Right-handed 310
Helix 88	AJ7	F	93	95	Right-handed 310
Helix 89	AJ8	F	96	109	Right-handed alpha
Helix 90	AJ9	F	142	156	Right-handed alpha
Helix 91	AK1	F	168	178	Right-handed alpha
Helix 92	AK2	F	196	206	Right-handed alpha
Helix 93	AK3	F	231	241	Right-handed alpha
Helix 94	AK4	F	244	256	Right-handed alpha
Helix 95	AK5	F	266	274	Right-handed alpha
Helix 96	AK6	F	275	279	Right-handed 310
Helix 97	AK7	F	282	291	Right-handed alpha
Helix 98	AK8	F	312	317	Right-handed alpha

There are 16 sheets in PDB entry 7MBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	16	18	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	49	51	parallel
Strand 3	A	82	87	parallel
Strand 4	A	115	118	parallel
Strand 5	A	162	165	parallel
Strand 6	A	185	189	parallel
Strand 7	A	209	213	parallel
Strand 8	A	259	262	parallel
Strand 9	A	20	23	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	138	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	16	18	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	49	51	parallel
Strand 3	B	82	87	parallel
Strand 4	B	113	118	parallel
Strand 5	B	159	165	parallel
Strand 6	B	186	189	parallel
Strand 7	B	211	213	parallel
Strand 8	B	259	262	parallel
Strand 9	B	20	22	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	138	140	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	16	18	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	49	51	parallel
Strand 3	C	82	87	parallel
Strand 4	C	115	118	parallel
Strand 5	C	162	165	parallel
Strand 6	C	185	189	parallel
Strand 7	C	209	213	parallel
Strand 8	C	259	262	parallel
Strand 9	C	20	23	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	16	18	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	49	51	parallel
Strand 3	D	82	87	parallel
Strand 4	D	115	118	parallel
Strand 5	D	162	165	parallel
Strand 6	D	185	189	parallel
Strand 7	D	209	213	parallel
Strand 8	D	259	262	parallel
Strand 9	D	20	22	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	138	139	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	E	16	18	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	49	51	parallel
Strand 3	E	82	87	parallel
Strand 4	E	115	118	parallel
Strand 5	E	162	165	parallel
Strand 6	E	185	189	parallel
Strand 7	E	209	213	parallel
Strand 8	E	259	262	parallel
Strand 9	E	20	23	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	F	16	18	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	23	first strand
Strand 2	F	49	51	parallel
Strand 3	F	82	87	parallel
Strand 4	F	115	118	parallel
Strand 5	F	162	165	parallel
Strand 6	F	185	189	parallel
Strand 7	F	209	213	parallel
Strand 8	F	259	262	parallel
Strand 9	F	20	23	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	124	first strand
Strand 2	F	138	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBF