Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MBM entry

There are 7 chains in PDB entry 7MBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	GLU 349
B	PRO 33	SER 332
C	ALA 3764	ASN 3969
D	VAL 287	GLY 504
G	PRO 38	ARG 134
H	LEU 22	GLY 101
I	ARG 11	GLN 104

There are 37 helices in PDB entry 7MBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	234	Right-handed alpha
Helix 2	AA2	C	3815	3828	Right-handed alpha
Helix 3	AA3	C	3866	3879	Right-handed alpha
Helix 4	AA4	C	3900	3904	Right-handed 310
Helix 5	AA5	D	368	372	Right-handed 310
Helix 6	AA6	G	44	57	Right-handed alpha
Helix 7	AA7	G	63	76	Right-handed alpha
Helix 8	AA8	G	85	114	Right-handed alpha
Helix 9	AA9	G	120	132	Right-handed alpha
Helix 10	AB1	H	32	42	Right-handed alpha
Helix 11	AB2	H	49	77	Right-handed alpha
Helix 12	AB3	H	82	94	Right-handed alpha
Helix 13	AB4	I	27	36	Right-handed alpha
Helix 14	AB5	I	46	73	Right-handed alpha
Helix 15	AB6	I	79	90	Right-handed alpha
Helix 16	AB7	I	91	97	Right-handed alpha
Helix 17	AB8	J	34	46	Right-handed alpha
Helix 18	AB9	J	52	81	Right-handed alpha
Helix 19	AC1	J	87	99	Right-handed alpha
Helix 20	AC2	J	101	120	Right-handed alpha
Helix 21	AC3	K	44	57	Right-handed alpha
Helix 22	AC4	K	63	76	Right-handed alpha
Helix 23	AC5	K	85	114	Right-handed alpha
Helix 24	AC6	K	120	132	Right-handed alpha
Helix 25	AC7	L	25	29	Right-handed 310
Helix 26	AC8	L	30	42	Right-handed alpha
Helix 27	AC9	L	49	76	Right-handed alpha
Helix 28	AD1	L	82	94	Right-handed alpha
Helix 29	AD2	M	16	22	Right-handed alpha
Helix 30	AD3	M	27	37	Right-handed alpha
Helix 31	AD4	M	46	73	Right-handed alpha
Helix 32	AD5	M	79	89	Right-handed alpha
Helix 33	AD6	M	92	97	Right-handed alpha
Helix 34	AD7	N	34	46	Right-handed alpha
Helix 35	AD8	N	52	81	Right-handed alpha
Helix 36	AD9	N	87	99	Right-handed alpha
Helix 37	AE1	N	100	120	Right-handed alpha

There are 27 sheets in PDB entry 7MBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	47	50	anti-parallel
Strand 4	A	60	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	122	126	anti-parallel
Strand 3	A	133	136	anti-parallel
Strand 4	A	142	144	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	165	169	anti-parallel
Strand 3	A	175	179	anti-parallel
Strand 4	A	187	189	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	221	226	anti-parallel
Strand 3	A	243	246	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	265	270	anti-parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	288	290	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	310	314	anti-parallel
Strand 3	A	317	321	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	328	331	anti-parallel
Strand 3	B	315	320	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	60	64	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	82	83	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	113	115	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	153	157	anti-parallel
Strand 4	B	166	167	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	185	190	anti-parallel
Strand 3	B	196	199	anti-parallel
Strand 4	B	205	207	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	239	242	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	297	298	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3834	3835	first strand
Strand 2	C	3841	3842	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3856	3857	first strand
Strand 2	C	3927	3928	anti-parallel
Strand 3	C	3915	3916	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3862	3864	first strand
Strand 2	C	3891	3894	anti-parallel
Strand 3	C	3884	3886	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3919	3920	first strand
Strand 2	C	3923	3924	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	307	308	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	469	473	anti-parallel
Strand 3	D	343	347	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	391	392	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	379	380	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	451	first strand
Strand 2	D	454	460	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	98	first strand
Strand 2	M	100	102	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	43	first strand
Strand 2	J	85	86	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	42	43	first strand
Strand 2	N	85	86	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	77	78	first strand
Strand 2	N	50	51	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBM