Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MBP entry

There are 4 chains in PDB entry 7MBP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 16	MET 1092
B	ARG 16	MET 1092
C	ARG 16	MET 1092
D	ARG 16	MET 1092

There are188 helices in PDB entry 7MBP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	51	Right-handed alpha
Helix 2	AA2	A	73	89	Right-handed alpha
Helix 3	AA3	A	102	119	Right-handed alpha
Helix 4	AA4	A	135	137	Right-handed 310
Helix 5	AA5	A	139	145	Right-handed alpha
Helix 6	AA6	A	185	199	Right-handed alpha
Helix 7	AA7	A	223	225	Right-handed 310
Helix 8	AA8	A	226	236	Right-handed alpha
Helix 9	AA9	A	248	260	Right-handed alpha
Helix 10	AB1	A	263	275	Right-handed alpha
Helix 11	AB2	A	280	298	Right-handed alpha
Helix 12	AB3	A	311	328	Right-handed alpha
Helix 13	AB4	A	334	344	Right-handed alpha
Helix 14	AB5	A	346	354	Right-handed alpha
Helix 15	AB6	A	362	376	Right-handed alpha
Helix 16	AB7	A	378	387	Right-handed alpha
Helix 17	AB8	A	391	396	Right-handed alpha
Helix 18	AB9	A	397	407	Right-handed alpha
Helix 19	AC1	A	412	429	Right-handed alpha
Helix 20	AC2	A	450	462	Right-handed alpha
Helix 21	AC3	A	499	511	Right-handed alpha
Helix 22	AC4	A	513	522	Right-handed alpha
Helix 23	AC5	A	526	545	Right-handed alpha
Helix 24	AC6	A	547	556	Right-handed alpha
Helix 25	AC7	A	558	574	Right-handed alpha
Helix 26	AC8	A	576	584	Right-handed alpha
Helix 27	AC9	A	594	602	Right-handed alpha
Helix 28	AD1	A	603	608	Right-handed alpha
Helix 29	AD2	A	609	622	Right-handed alpha
Helix 30	AD3	A	629	639	Right-handed alpha
Helix 31	AD4	A	640	645	Right-handed 310
Helix 32	AD5	A	699	714	Right-handed alpha
Helix 33	AD6	A	715	740	Right-handed alpha
Helix 34	AD7	A	751	774	Right-handed alpha
Helix 35	AD8	A	780	791	Right-handed alpha
Helix 36	AD9	A	791	813	Right-handed alpha
Helix 37	AE1	A	816	840	Right-handed alpha
Helix 38	AE2	A	845	882	Right-handed alpha
Helix 39	AE3	A	887	902	Right-handed alpha
Helix 40	AE4	A	903	905	Right-handed 310
Helix 41	AE5	A	908	912	Right-handed 310
Helix 42	AE6	A	913	917	Right-handed 310
Helix 43	AE7	A	925	932	Right-handed alpha
Helix 44	AE8	A	942	998	Right-handed alpha
Helix 45	AE9	A	1005	1020	Right-handed alpha
Helix 46	AF1	A	1034	1062	Right-handed alpha
Helix 47	AF2	A	1063	1092	Right-handed alpha
Helix 48	AF3	B	40	51	Right-handed alpha
Helix 49	AF4	B	73	89	Right-handed alpha
Helix 50	AF5	B	102	119	Right-handed alpha
Helix 51	AF6	B	135	137	Right-handed 310
Helix 52	AF7	B	139	145	Right-handed alpha
Helix 53	AF8	B	185	199	Right-handed alpha
Helix 54	AF9	B	223	225	Right-handed 310
Helix 55	AG1	B	226	236	Right-handed alpha
Helix 56	AG2	B	248	260	Right-handed alpha
Helix 57	AG3	B	263	275	Right-handed alpha
Helix 58	AG4	B	280	298	Right-handed alpha
Helix 59	AG5	B	311	328	Right-handed alpha
Helix 60	AG6	B	334	344	Right-handed alpha
Helix 61	AG7	B	346	354	Right-handed alpha
Helix 62	AG8	B	362	376	Right-handed alpha
Helix 63	AG9	B	378	387	Right-handed alpha
Helix 64	AH1	B	391	396	Right-handed alpha
Helix 65	AH2	B	397	407	Right-handed alpha
Helix 66	AH3	B	412	429	Right-handed alpha
Helix 67	AH4	B	450	462	Right-handed alpha
Helix 68	AH5	B	499	511	Right-handed alpha
Helix 69	AH6	B	513	524	Right-handed alpha
Helix 70	AH7	B	526	545	Right-handed alpha
Helix 71	AH8	B	547	556	Right-handed alpha
Helix 72	AH9	B	558	574	Right-handed alpha
Helix 73	AI1	B	576	584	Right-handed alpha
Helix 74	AI2	B	594	602	Right-handed alpha
Helix 75	AI3	B	603	608	Right-handed alpha
Helix 76	AI4	B	609	622	Right-handed alpha
Helix 77	AI5	B	629	639	Right-handed alpha
Helix 78	AI6	B	640	645	Right-handed 310
Helix 79	AI7	B	699	714	Right-handed alpha
Helix 80	AI8	B	715	740	Right-handed alpha
Helix 81	AI9	B	751	774	Right-handed alpha
Helix 82	AJ1	B	780	791	Right-handed alpha
Helix 83	AJ2	B	791	813	Right-handed alpha
Helix 84	AJ3	B	816	840	Right-handed alpha
Helix 85	AJ4	B	845	882	Right-handed alpha
Helix 86	AJ5	B	887	902	Right-handed alpha
Helix 87	AJ6	B	903	905	Right-handed 310
Helix 88	AJ7	B	908	912	Right-handed 310
Helix 89	AJ8	B	913	917	Right-handed 310
Helix 90	AJ9	B	925	932	Right-handed alpha
Helix 91	AK1	B	942	998	Right-handed alpha
Helix 92	AK2	B	1005	1020	Right-handed alpha
Helix 93	AK3	B	1034	1062	Right-handed alpha
Helix 94	AK4	B	1063	1092	Right-handed alpha
Helix 95	AK5	C	40	51	Right-handed alpha
Helix 96	AK6	C	73	89	Right-handed alpha
Helix 97	AK7	C	102	119	Right-handed alpha
Helix 98	AK8	C	135	137	Right-handed 310
Helix 99	AK9	C	139	145	Right-handed alpha
Helix 100	AL1	C	185	199	Right-handed alpha
Helix 101	AL2	C	223	225	Right-handed 310
Helix 102	AL3	C	226	236	Right-handed alpha
Helix 103	AL4	C	248	260	Right-handed alpha
Helix 104	AL5	C	263	275	Right-handed alpha
Helix 105	AL6	C	280	298	Right-handed alpha
Helix 106	AL7	C	311	328	Right-handed alpha
Helix 107	AL8	C	334	344	Right-handed alpha
Helix 108	AL9	C	346	354	Right-handed alpha
Helix 109	AM1	C	362	376	Right-handed alpha
Helix 110	AM2	C	378	387	Right-handed alpha
Helix 111	AM3	C	391	396	Right-handed alpha
Helix 112	AM4	C	397	407	Right-handed alpha
Helix 113	AM5	C	412	429	Right-handed alpha
Helix 114	AM6	C	450	462	Right-handed alpha
Helix 115	AM7	C	499	511	Right-handed alpha
Helix 116	AM8	C	513	524	Right-handed alpha
Helix 117	AM9	C	526	545	Right-handed alpha
Helix 118	AN1	C	547	556	Right-handed alpha
Helix 119	AN2	C	558	574	Right-handed alpha
Helix 120	AN3	C	576	584	Right-handed alpha
Helix 121	AN4	C	594	602	Right-handed alpha
Helix 122	AN5	C	603	608	Right-handed alpha
Helix 123	AN6	C	609	622	Right-handed alpha
Helix 124	AN7	C	629	639	Right-handed alpha
Helix 125	AN8	C	640	645	Right-handed 310
Helix 126	AN9	C	699	714	Right-handed alpha
Helix 127	AO1	C	715	740	Right-handed alpha
Helix 128	AO2	C	751	774	Right-handed alpha
Helix 129	AO3	C	780	791	Right-handed alpha
Helix 130	AO4	C	791	813	Right-handed alpha
Helix 131	AO5	C	816	840	Right-handed alpha
Helix 132	AO6	C	845	882	Right-handed alpha
Helix 133	AO7	C	887	902	Right-handed alpha
Helix 134	AO8	C	903	905	Right-handed 310
Helix 135	AO9	C	908	912	Right-handed 310
Helix 136	AP1	C	913	917	Right-handed 310
Helix 137	AP2	C	925	932	Right-handed alpha
Helix 138	AP3	C	942	998	Right-handed alpha
Helix 139	AP4	C	1005	1020	Right-handed alpha
Helix 140	AP5	C	1034	1062	Right-handed alpha
Helix 141	AP6	C	1063	1092	Right-handed alpha
Helix 142	AP7	D	40	51	Right-handed alpha
Helix 143	AP8	D	73	89	Right-handed alpha
Helix 144	AP9	D	102	119	Right-handed alpha
Helix 145	AQ1	D	135	137	Right-handed 310
Helix 146	AQ2	D	139	145	Right-handed alpha
Helix 147	AQ3	D	185	199	Right-handed alpha
Helix 148	AQ4	D	223	225	Right-handed 310
Helix 149	AQ5	D	226	236	Right-handed alpha
Helix 150	AQ6	D	248	260	Right-handed alpha
Helix 151	AQ7	D	263	275	Right-handed alpha
Helix 152	AQ8	D	280	298	Right-handed alpha
Helix 153	AQ9	D	311	328	Right-handed alpha
Helix 154	AR1	D	334	344	Right-handed alpha
Helix 155	AR2	D	346	354	Right-handed alpha
Helix 156	AR3	D	362	376	Right-handed alpha
Helix 157	AR4	D	378	387	Right-handed alpha
Helix 158	AR5	D	391	396	Right-handed alpha
Helix 159	AR6	D	397	407	Right-handed alpha
Helix 160	AR7	D	412	429	Right-handed alpha
Helix 161	AR8	D	450	462	Right-handed alpha
Helix 162	AR9	D	499	511	Right-handed alpha
Helix 163	AS1	D	513	524	Right-handed alpha
Helix 164	AS2	D	526	545	Right-handed alpha
Helix 165	AS3	D	547	556	Right-handed alpha
Helix 166	AS4	D	558	574	Right-handed alpha
Helix 167	AS5	D	576	584	Right-handed alpha
Helix 168	AS6	D	594	602	Right-handed alpha
Helix 169	AS7	D	603	608	Right-handed alpha
Helix 170	AS8	D	609	622	Right-handed alpha
Helix 171	AS9	D	629	639	Right-handed alpha
Helix 172	AT1	D	640	645	Right-handed 310
Helix 173	AT2	D	699	714	Right-handed alpha
Helix 174	AT3	D	715	740	Right-handed alpha
Helix 175	AT4	D	751	774	Right-handed alpha
Helix 176	AT5	D	780	791	Right-handed alpha
Helix 177	AT6	D	791	813	Right-handed alpha
Helix 178	AT7	D	816	840	Right-handed alpha
Helix 179	AT8	D	845	882	Right-handed alpha
Helix 180	AT9	D	887	902	Right-handed alpha
Helix 181	AU1	D	903	905	Right-handed 310
Helix 182	AU2	D	908	912	Right-handed 310
Helix 183	AU3	D	913	917	Right-handed 310
Helix 184	AU4	D	925	932	Right-handed alpha
Helix 185	AU5	D	942	998	Right-handed alpha
Helix 186	AU6	D	1005	1020	Right-handed alpha
Helix 187	AU7	D	1034	1062	Right-handed alpha
Helix 188	AU8	D	1063	1092	Right-handed alpha

There are 8 sheets in PDB entry 7MBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	17	23	parallel
Strand 3	A	28	35	anti-parallel
Strand 4	A	173	177	parallel
Strand 5	A	127	133	parallel
Strand 6	A	93	97	parallel
Strand 7	A	59	63	parallel
Strand 8	A	215	219	parallel
Strand 9	A	240	243	parallel
Strand 10	A	301	304	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	592	593	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	17	23	parallel
Strand 3	B	28	35	anti-parallel
Strand 4	B	173	177	parallel
Strand 5	B	127	133	parallel
Strand 6	B	93	97	parallel
Strand 7	B	59	63	parallel
Strand 8	B	215	219	parallel
Strand 9	B	240	243	parallel
Strand 10	B	301	304	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	586	first strand
Strand 2	B	592	593	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	17	23	parallel
Strand 3	C	28	35	anti-parallel
Strand 4	C	173	177	parallel
Strand 5	C	127	133	parallel
Strand 6	C	93	97	parallel
Strand 7	C	59	63	parallel
Strand 8	C	215	219	parallel
Strand 9	C	240	243	parallel
Strand 10	C	301	304	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	586	first strand
Strand 2	C	592	593	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	155	first strand
Strand 2	D	17	23	parallel
Strand 3	D	28	35	anti-parallel
Strand 4	D	173	177	parallel
Strand 5	D	127	133	parallel
Strand 6	D	93	97	parallel
Strand 7	D	59	63	parallel
Strand 8	D	215	219	parallel
Strand 9	D	240	243	parallel
Strand 10	D	301	304	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	586	first strand
Strand 2	D	592	593	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MBP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBP