Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MBY entry

There are 6 chains in PDB entry 7MBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	ASN 340
G	THR 6	ARG 62
P	ASP 1	ASP 1
P	MET 3	PHE 8
R	GLU 38	PRO 386
A	ALA 18	VAL 394

There are 27 helices in PDB entry 7MBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	G	7	24	Right-handed alpha
Helix 4	AA4	G	29	44	Right-handed alpha
Helix 5	AA5	R	39	69	Right-handed alpha
Helix 6	AA6	R	74	95	Right-handed alpha
Helix 7	AA7	R	99	105	Right-handed alpha
Helix 8	AA8	R	110	145	Right-handed alpha
Helix 9	AA9	R	145	153	Right-handed alpha
Helix 10	AB1	R	154	173	Right-handed alpha
Helix 11	AB2	R	174	179	Right-handed alpha
Helix 12	AB3	R	202	218	Right-handed alpha
Helix 13	AB4	R	218	238	Right-handed alpha
Helix 14	AB5	R	307	339	Right-handed alpha
Helix 15	AB6	R	339	347	Right-handed alpha
Helix 16	AB7	R	349	361	Right-handed alpha
Helix 17	AB8	R	361	371	Right-handed alpha
Helix 18	AB9	R	374	385	Right-handed alpha
Helix 19	AC1	A	20	39	Right-handed alpha
Helix 20	AC2	A	52	57	Right-handed alpha
Helix 21	AC3	A	233	239	Right-handed 310
Helix 22	AC4	A	265	278	Right-handed alpha
Helix 23	AC5	A	293	303	Right-handed alpha
Helix 24	AC6	A	307	312	Right-handed alpha
Helix 25	AC7	A	313	316	Right-handed 310
Helix 26	AC8	A	331	352	Right-handed alpha
Helix 27	AC9	A	370	391	Right-handed alpha

There are 9 sheets in PDB entry 7MBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	259	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	306	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	180	186	first strand
Strand 2	R	192	198	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	360	361	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MBY