Analysis of interatomic Contacts of Structural Units in PDB entry:
7MCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MCD entry

There are 4 chains in PDB entry 7MCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLY 183
B
 MET 0ALA 182
C
 MET 0ALA 182
D
 ASP 1GLY 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7MCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
55 70Right-handed alpha
Helix 4
AA4
A
80 90Right-handed alpha
Helix 5
AA5
A
101 116Right-handed alpha
Helix 6
AA6
A
126 137Right-handed alpha
Helix 7
AA7
A
147 162Right-handed alpha
Helix 8
AA8
A
172 183Right-handed alpha
Helix 9
AA9
B
9 22Right-handed alpha
Helix 10
AB1
B
34 45Right-handed alpha
Helix 11
AB2
B
55 70Right-handed alpha
Helix 12
AB3
B
80 91Right-handed alpha
Helix 13
AB4
B
106 116Right-handed alpha
Helix 14
AB5
B
126 137Right-handed alpha
Helix 15
AB6
B
147 162Right-handed alpha
Helix 16
AB7
B
172 181Right-handed alpha
Helix 17
AB8
C
12 23Right-handed alpha
Helix 18
AB9
C
34 44Right-handed alpha
Helix 19
AC1
C
55 70Right-handed alpha
Helix 20
AC2
C
80 91Right-handed alpha
Helix 21
AC3
C
101 116Right-handed alpha
Helix 22
AC4
C
126 137Right-handed alpha
Helix 23
AC5
C
147 162Right-handed alpha
Helix 24
AC6
C
172 182Right-handed alpha
Helix 25
AC7
D
9 23Right-handed alpha
Helix 26
AC8
D
34 44Right-handed alpha
Helix 27
AC9
D
55 70Right-handed alpha
Helix 28
AD1
D
80 91Right-handed alpha
Helix 29
AD2
D
101 116Right-handed alpha
Helix 30
AD3
D
126 137Right-handed alpha
Helix 31
AD4
D
147 162Right-handed alpha
Helix 32
AD5
D
172 182Right-handed alpha
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There are 4 sheets in PDB entry 7MCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
28 32parallel
Strand 3
A
48 51parallel
Strand 4
A
73 78parallel
Strand 5
A
94 97parallel
Strand 6
A
119 124parallel
Strand 7
A
140 143parallel
Strand 8
A
165 170parallel
Strand 9
A
2 5parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 5first strand
Strand 2
B
27 32parallel
Strand 3
B
48 51parallel
Strand 4
B
73 78parallel
Strand 5
B
94 97parallel
Strand 6
B
119 124parallel
Strand 7
B
140 143parallel
Strand 8
B
165 170parallel
Strand 9
B
1 5parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 5first strand
Strand 2
C
27 32parallel
Strand 3
C
48 51parallel
Strand 4
C
74 78parallel
Strand 5
C
94 97parallel
Strand 6
C
119 124parallel
Strand 7
C
140 143parallel
Strand 8
C
165 170parallel
Strand 9
C
1 5parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
27 32parallel
Strand 3
D
48 51parallel
Strand 4
D
73 78parallel
Strand 5
D
94 97parallel
Strand 6
D
119 124parallel
Strand 7
D
140 143parallel
Strand 8
D
165 170parallel
Strand 9
D
2 5parallel
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