Analysis of interatomic Contacts of Structural Units in PDB entry:
7MD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MD1 entry

There are 2 chains in PDB entry 7MD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 SER 1THR 195
H
 TYR 197LEU 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7MD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
2 10Right-handed alpha
Helix 2
AA2
H
50 64Right-handed alpha
Helix 3
AA3
H
74 84Right-handed alpha
Helix 4
AA4
H
99 109Right-handed alpha
Helix 5
AA5
H
110 114Right-handed 310
Helix 6
AA6
H
125 132Right-handed alpha
Helix 7
AA7
H
153 164Right-handed alpha
Helix 8
AA8
H
175 180Right-handed alpha
Helix 9
AA9
H
181 186Right-handed 310
Helix 10
AB1
H
213 228Right-handed alpha
Helix 11
AB2
H
232 244Right-handed alpha
Helix 12
AB3
H
245 267Right-handed alpha
Helix 13
AB4
H
283 291Right-handed alpha
Helix 14
AB5
H
304 315Right-handed alpha
Helix 15
AB6
H
333 338Right-handed alpha
Helix 16
AB7
H
343 351Right-handed alpha
Helix 17
AB8
H
365 379Right-handed alpha
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There are 2 sheets in PDB entry 7MD1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
68 72first strand
Strand 2
H
207 211anti-parallel
Strand 3
H
189 193anti-parallel
Strand 4
H
167 171parallel
Strand 5
H
136 142parallel
Strand 6
H
91 95parallel
Strand 7
H
116 120parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
273 274first strand
Strand 2
H
297 301anti-parallel
Strand 3
H
356 360anti-parallel
Strand 4
H
329 332anti-parallel
Strand 5
H
318 320parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il