Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MDC entry

There is 1 chain in PDB entry 7MDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 36ILE 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7MDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 55Right-handed alpha
Helix 2
AA2
A
94 96Right-handed 310
Helix 3
AA3
A
97 111Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
139 145Right-handed alpha
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
166 172Right-handed alpha
Helix 8
AA8
A
189 203Right-handed alpha
Helix 9
AA9
A
205 214Right-handed alpha
Helix 10
AB1
A
214 219Right-handed alpha
Helix 11
AB2
A
254 256Right-handed 310
Helix 12
AB3
A
257 262Right-handed alpha
Helix 13
AB4
A
266 279Right-handed alpha
Helix 14
AB5
A
284 295Right-handed alpha
Helix 15
AB6
A
342 344Right-handed 310
Helix 16
AB7
A
356 361Right-handed alpha
Helix 17
AB8
A
361 373Right-handed alpha
Helix 18
AB9
A
381 411Right-handed alpha
Helix 19
AC1
A
431 450Right-handed alpha
Helix 20
AC2
A
450 455Right-handed alpha
Helix 21
AC3
A
459 467Right-handed alpha
Helix 22
AC4
A
472 491Right-handed alpha
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There are 4 sheets in PDB entry 7MDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
68 78anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
346 352anti-parallel
Strand 5
A
335 341anti-parallel
Strand 6
A
324 330anti-parallel
Strand 7
A
316 318anti-parallel
Strand 8
A
310 311anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
263 265anti-parallel
Strand 3
A
224 225anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
129 131anti-parallel
Strand 3
A
174 175parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
245 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il