Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MDH entry

There are 4 chains in PDB entry 7MDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23LEU 385
B
 ARG 21PRO 386
C
 ASP 23MET 384
D
 ARG 21GLU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7MDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 28Right-handed 310
Helix 2
2
A
57 68Right-handed alpha
Helix 3
3
A
86 102Right-handed 310
Helix 4
4
A
116 119Right-handed alpha
Helix 5
5
A
140 161Right-handed alpha
Helix 6
6
A
175 185Right-handed alpha
Helix 7
7
A
191 193Right-handed 310
Helix 8
8
A
199 212Right-handed alpha
Helix 9
9
A
217 219Right-handed 310
Helix 10
10
A
247 249Right-handed 310
Helix 11
11
A
254 266Right-handed alpha
Helix 12
12
A
268 275Right-handed alpha
Helix 13
13
A
281 296Right-handed alpha
Helix 14
14
A
346 370Right-handed alpha
Helix 15
15
B
26 30Right-handed 310
Helix 16
16
B
57 67Right-handed alpha
Helix 17
17
B
89 102Right-handed alpha
Helix 18
18
B
116 119Right-handed alpha
Helix 19
19
B
140 161Right-handed alpha
Helix 20
20
B
175 185Right-handed alpha
Helix 21
21
B
191 193Right-handed 310
Helix 22
22
B
199 212Right-handed alpha
Helix 23
23
B
217 219Right-handed 310
Helix 24
24
B
247 250Right-handed alpha
Helix 25
25
B
254 275Right-handed alpha
Helix 26
26
B
281 296Right-handed alpha
Helix 27
27
B
346 370Right-handed alpha
Helix 28
28
C
26 29Right-handed 310
Helix 29
29
C
57 68Right-handed alpha
Helix 30
30
C
89 102Right-handed alpha
Helix 31
31
C
116 119Right-handed alpha
Helix 32
32
C
140 161Right-handed alpha
Helix 33
33
C
175 185Right-handed alpha
Helix 34
34
C
191 193Right-handed 310
Helix 35
35
C
199 212Right-handed alpha
Helix 36
36
C
217 219Right-handed 310
Helix 37
37
C
247 250Right-handed alpha
Helix 38
38
C
254 271Right-handed alpha
Helix 39
39
C
281 296Right-handed alpha
Helix 40
40
C
346 370Right-handed alpha
Helix 41
41
D
26 30Right-handed 310
Helix 42
42
D
57 68Right-handed alpha
Helix 43
43
D
86 102Right-handed 310
Helix 44
44
D
116 119Right-handed alpha
Helix 45
45
D
140 161Right-handed alpha
Helix 46
46
D
175 184Right-handed alpha
Helix 47
47
D
191 193Right-handed 310
Helix 48
48
D
199 212Right-handed alpha
Helix 49
49
D
217 219Right-handed 310
Helix 50
50
D
247 250Right-handed alpha
Helix 51
51
D
254 259Right-handed alpha
Helix 52
52
D
261 274Right-handed alpha
Helix 53
53
D
281 295Right-handed alpha
Helix 54
54
D
346 370Right-handed alpha
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There are 12 sheets in PDB entry 7MDH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
167 170parallel
Strand 3
A
125 128parallel
Strand 4
A
47 52parallel
Strand 5
A
78 83parallel
Strand 6
A
107 113parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
234 236anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 310first strand
Strand 2
A
323 328anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
167 170parallel
Strand 3
B
125 128parallel
Strand 4
B
47 52parallel
Strand 5
B
78 83parallel
Strand 6
B
107 113parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
234 236anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 310first strand
Strand 2
B
323 328anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
167 170parallel
Strand 3
C
125 128parallel
Strand 4
C
47 52parallel
Strand 5
C
78 83parallel
Strand 6
C
107 113parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 226first strand
Strand 2
C
234 236anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
305 310first strand
Strand 2
C
323 328anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 196first strand
Strand 2
D
167 170parallel
Strand 3
D
125 128parallel
Strand 4
D
47 52parallel
Strand 5
D
78 83parallel
Strand 6
D
107 113parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 226first strand
Strand 2
D
234 236anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
305 310first strand
Strand 2
D
323 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il