Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MDI entry

There are 8 chains in PDB entry 7MDI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	ASP 738
E	LEU -3	GLU 376
B	THR 5	ASP 738
G	LEU -3	GLU 376
D	THR 5	ASP 738
F	LEU -3	GLU 376
C	THR 5	ASP 738
H	LEU -3	GLU 376

There are188 helices in PDB entry 7MDI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	32	Right-handed alpha
Helix 2	AA2	A	39	46	Right-handed alpha
Helix 3	AA3	A	56	69	Right-handed alpha
Helix 4	AA4	A	79	96	Right-handed alpha
Helix 5	AA5	A	107	112	Right-handed alpha
Helix 6	AA6	A	113	115	Right-handed 310
Helix 7	AA7	A	121	125	Right-handed 310
Helix 8	AA8	A	126	135	Right-handed alpha
Helix 9	AA9	A	138	143	Right-handed 310
Helix 10	AB1	A	146	157	Right-handed alpha
Helix 11	AB2	A	172	182	Right-handed alpha
Helix 12	AB3	A	190	204	Right-handed alpha
Helix 13	AB4	A	210	215	Right-handed alpha
Helix 14	AB5	A	235	250	Right-handed alpha
Helix 15	AB6	A	279	292	Right-handed alpha
Helix 16	AB7	A	315	323	Right-handed 310
Helix 17	AB8	A	344	352	Right-handed alpha
Helix 18	AB9	A	368	373	Right-handed alpha
Helix 19	AC1	A	374	387	Right-handed alpha
Helix 20	AC2	A	396	412	Right-handed alpha
Helix 21	AC3	A	476	478	Right-handed 310
Helix 22	AC4	A	479	496	Right-handed alpha
Helix 23	AC5	A	504	513	Right-handed alpha
Helix 24	AC6	A	522	530	Right-handed alpha
Helix 25	AC7	A	540	544	Right-handed 310
Helix 26	AC8	A	545	562	Right-handed alpha
Helix 27	AC9	A	573	578	Right-handed 310
Helix 28	AD1	A	601	611	Right-handed alpha
Helix 29	AD2	A	670	674	Right-handed 310
Helix 30	AD3	A	676	689	Right-handed alpha
Helix 31	AD4	A	702	706	Right-handed 310
Helix 32	AD5	A	714	726	Right-handed alpha
Helix 33	AD6	E	40	45	Right-handed alpha
Helix 34	AD7	E	50	54	Right-handed 310
Helix 35	AD8	E	57	62	Right-handed alpha
Helix 36	AD9	E	67	87	Right-handed alpha
Helix 37	AE1	E	90	97	Right-handed alpha
Helix 38	AE2	E	102	128	Right-handed alpha
Helix 39	AE3	E	133	138	Right-handed alpha
Helix 40	AE4	E	144	172	Right-handed alpha
Helix 41	AE5	E	188	205	Right-handed alpha
Helix 42	AE6	E	207	216	Right-handed alpha
Helix 43	AE7	E	225	254	Right-handed alpha
Helix 44	AE8	E	261	269	Right-handed alpha
Helix 45	AE9	E	270	288	Right-handed alpha
Helix 46	AF1	E	302	318	Right-handed alpha
Helix 47	AF2	E	334	340	Right-handed 310
Helix 48	AF3	B	24	32	Right-handed alpha
Helix 49	AF4	B	39	46	Right-handed alpha
Helix 50	AF5	B	56	69	Right-handed alpha
Helix 51	AF6	B	79	96	Right-handed alpha
Helix 52	AF7	B	107	112	Right-handed alpha
Helix 53	AF8	B	113	115	Right-handed 310
Helix 54	AF9	B	121	125	Right-handed 310
Helix 55	AG1	B	126	135	Right-handed alpha
Helix 56	AG2	B	138	143	Right-handed 310
Helix 57	AG3	B	146	157	Right-handed alpha
Helix 58	AG4	B	172	182	Right-handed alpha
Helix 59	AG5	B	190	204	Right-handed alpha
Helix 60	AG6	B	210	215	Right-handed alpha
Helix 61	AG7	B	235	250	Right-handed alpha
Helix 62	AG8	B	279	292	Right-handed alpha
Helix 63	AG9	B	315	323	Right-handed 310
Helix 64	AH1	B	344	352	Right-handed alpha
Helix 65	AH2	B	368	373	Right-handed alpha
Helix 66	AH3	B	374	387	Right-handed alpha
Helix 67	AH4	B	396	412	Right-handed alpha
Helix 68	AH5	B	476	478	Right-handed 310
Helix 69	AH6	B	479	496	Right-handed alpha
Helix 70	AH7	B	504	513	Right-handed alpha
Helix 71	AH8	B	522	530	Right-handed alpha
Helix 72	AH9	B	540	544	Right-handed 310
Helix 73	AI1	B	545	562	Right-handed alpha
Helix 74	AI2	B	573	578	Right-handed 310
Helix 75	AI3	B	601	611	Right-handed alpha
Helix 76	AI4	B	670	674	Right-handed 310
Helix 77	AI5	B	676	689	Right-handed alpha
Helix 78	AI6	B	702	706	Right-handed 310
Helix 79	AI7	B	714	726	Right-handed alpha
Helix 80	AI8	G	40	45	Right-handed alpha
Helix 81	AI9	G	50	54	Right-handed 310
Helix 82	AJ1	G	57	62	Right-handed alpha
Helix 83	AJ2	G	67	87	Right-handed alpha
Helix 84	AJ3	G	90	97	Right-handed alpha
Helix 85	AJ4	G	102	128	Right-handed alpha
Helix 86	AJ5	G	133	138	Right-handed alpha
Helix 87	AJ6	G	144	172	Right-handed alpha
Helix 88	AJ7	G	188	205	Right-handed alpha
Helix 89	AJ8	G	207	216	Right-handed alpha
Helix 90	AJ9	G	225	254	Right-handed alpha
Helix 91	AK1	G	261	269	Right-handed alpha
Helix 92	AK2	G	270	288	Right-handed alpha
Helix 93	AK3	G	302	318	Right-handed alpha
Helix 94	AK4	G	334	340	Right-handed 310
Helix 95	AK5	D	24	32	Right-handed alpha
Helix 96	AK6	D	39	46	Right-handed alpha
Helix 97	AK7	D	56	69	Right-handed alpha
Helix 98	AK8	D	79	96	Right-handed alpha
Helix 99	AK9	D	107	112	Right-handed alpha
Helix 100	AL1	D	113	115	Right-handed 310
Helix 101	AL2	D	121	125	Right-handed 310
Helix 102	AL3	D	126	135	Right-handed alpha
Helix 103	AL4	D	138	143	Right-handed 310
Helix 104	AL5	D	146	157	Right-handed alpha
Helix 105	AL6	D	172	182	Right-handed alpha
Helix 106	AL7	D	190	204	Right-handed alpha
Helix 107	AL8	D	210	215	Right-handed alpha
Helix 108	AL9	D	235	250	Right-handed alpha
Helix 109	AM1	D	279	292	Right-handed alpha
Helix 110	AM2	D	315	323	Right-handed 310
Helix 111	AM3	D	344	352	Right-handed alpha
Helix 112	AM4	D	368	373	Right-handed alpha
Helix 113	AM5	D	374	387	Right-handed alpha
Helix 114	AM6	D	396	412	Right-handed alpha
Helix 115	AM7	D	476	478	Right-handed 310
Helix 116	AM8	D	479	496	Right-handed alpha
Helix 117	AM9	D	504	513	Right-handed alpha
Helix 118	AN1	D	522	530	Right-handed alpha
Helix 119	AN2	D	540	544	Right-handed 310
Helix 120	AN3	D	545	562	Right-handed alpha
Helix 121	AN4	D	573	578	Right-handed 310
Helix 122	AN5	D	601	611	Right-handed alpha
Helix 123	AN6	D	670	674	Right-handed 310
Helix 124	AN7	D	676	689	Right-handed alpha
Helix 125	AN8	D	702	706	Right-handed 310
Helix 126	AN9	D	714	726	Right-handed alpha
Helix 127	AO1	F	40	45	Right-handed alpha
Helix 128	AO2	F	50	54	Right-handed 310
Helix 129	AO3	F	57	62	Right-handed alpha
Helix 130	AO4	F	67	87	Right-handed alpha
Helix 131	AO5	F	90	97	Right-handed alpha
Helix 132	AO6	F	102	128	Right-handed alpha
Helix 133	AO7	F	133	138	Right-handed alpha
Helix 134	AO8	F	144	172	Right-handed alpha
Helix 135	AO9	F	188	205	Right-handed alpha
Helix 136	AP1	F	207	216	Right-handed alpha
Helix 137	AP2	F	225	254	Right-handed alpha
Helix 138	AP3	F	261	269	Right-handed alpha
Helix 139	AP4	F	270	288	Right-handed alpha
Helix 140	AP5	F	302	318	Right-handed alpha
Helix 141	AP6	F	335	340	Right-handed 310
Helix 142	AP7	C	24	32	Right-handed alpha
Helix 143	AP8	C	39	46	Right-handed alpha
Helix 144	AP9	C	56	69	Right-handed alpha
Helix 145	AQ1	C	79	96	Right-handed alpha
Helix 146	AQ2	C	107	112	Right-handed alpha
Helix 147	AQ3	C	113	115	Right-handed 310
Helix 148	AQ4	C	121	125	Right-handed 310
Helix 149	AQ5	C	126	135	Right-handed alpha
Helix 150	AQ6	C	138	143	Right-handed 310
Helix 151	AQ7	C	146	157	Right-handed alpha
Helix 152	AQ8	C	172	182	Right-handed alpha
Helix 153	AQ9	C	190	204	Right-handed alpha
Helix 154	AR1	C	210	215	Right-handed alpha
Helix 155	AR2	C	235	250	Right-handed alpha
Helix 156	AR3	C	279	292	Right-handed alpha
Helix 157	AR4	C	315	323	Right-handed 310
Helix 158	AR5	C	344	352	Right-handed alpha
Helix 159	AR6	C	368	373	Right-handed alpha
Helix 160	AR7	C	374	387	Right-handed alpha
Helix 161	AR8	C	396	412	Right-handed alpha
Helix 162	AR9	C	476	478	Right-handed 310
Helix 163	AS1	C	479	496	Right-handed alpha
Helix 164	AS2	C	504	513	Right-handed alpha
Helix 165	AS3	C	522	530	Right-handed alpha
Helix 166	AS4	C	540	544	Right-handed 310
Helix 167	AS5	C	545	562	Right-handed alpha
Helix 168	AS6	C	573	578	Right-handed 310
Helix 169	AS7	C	601	611	Right-handed alpha
Helix 170	AS8	C	670	674	Right-handed 310
Helix 171	AS9	C	676	689	Right-handed alpha
Helix 172	AT1	C	702	706	Right-handed 310
Helix 173	AT2	C	714	726	Right-handed alpha
Helix 174	AT3	H	40	45	Right-handed alpha
Helix 175	AT4	H	50	54	Right-handed 310
Helix 176	AT5	H	57	62	Right-handed alpha
Helix 177	AT6	H	67	87	Right-handed alpha
Helix 178	AT7	H	90	97	Right-handed alpha
Helix 179	AT8	H	102	128	Right-handed alpha
Helix 180	AT9	H	133	138	Right-handed alpha
Helix 181	AU1	H	144	172	Right-handed alpha
Helix 182	AU2	H	188	205	Right-handed alpha
Helix 183	AU3	H	207	216	Right-handed alpha
Helix 184	AU4	H	225	254	Right-handed alpha
Helix 185	AU5	H	261	269	Right-handed alpha
Helix 186	AU6	H	270	288	Right-handed alpha
Helix 187	AU7	H	302	318	Right-handed alpha
Helix 188	AU8	H	334	340	Right-handed 310

There are 24 sheets in PDB entry 7MDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	468	469	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	256	259	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	415	418	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	648	first strand
Strand 2	A	653	657	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	177	first strand
Strand 2	E	182	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	468	469	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	256	259	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	415	418	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	644	648	first strand
Strand 2	B	653	657	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	177	first strand
Strand 2	G	182	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	468	469	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	231	first strand
Strand 2	D	256	259	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	341	first strand
Strand 2	D	415	418	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	644	648	first strand
Strand 2	D	653	657	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	177	first strand
Strand 2	F	182	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	468	469	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	256	259	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	415	418	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	644	648	first strand
Strand 2	C	653	657	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	177	first strand
Strand 2	H	182	183	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MDI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDI