Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MDJ entry

There are 3 chains in PDB entry 7MDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PRO 221
B
 ASP 2THR 198
C
 SER 22GLY 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7MDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
162 166Right-handed 310
Helix 2
AA2
A
195 197Right-handed 310
Helix 3
AA3
B
80 84Right-handed 310
Helix 4
AA4
B
122 127Right-handed alpha
Helix 5
AA5
B
184 188Right-handed alpha
Helix 6
AA6
C
23 52Right-handed alpha
Helix 7
AA7
C
61 74Right-handed alpha
Helix 8
AA8
C
85 123Right-handed alpha
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There are 10 sheets in PDB entry 7MDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
115 119parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
A
49 54anti-parallel
Strand 6
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
115 119parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
108 111anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
184 193anti-parallel
Strand 4
A
177 178anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
213 218anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
63 66anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
103 108parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 50anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
103 108parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
98 99anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 119first strand
Strand 2
B
130 140anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
161 164anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
194 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il