Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MDM entry

There are 6 chains in PDB entry 7MDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 25	GLN 763
C	ARG 25	GLN 763
D	ARG 25	GLN 763
E	ARG 25	GLN 763
A	ARG 25	GLN 763
F	ASP 193	GLN 763

There are181 helices in PDB entry 7MDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	42	46	Right-handed 310
Helix 2	AA2	B	85	93	Right-handed alpha
Helix 3	AA3	B	130	140	Right-handed alpha
Helix 4	AA4	B	209	218	Right-handed alpha
Helix 5	AA5	B	220	226	Right-handed alpha
Helix 6	AA6	B	226	231	Right-handed alpha
Helix 7	AA7	B	250	263	Right-handed alpha
Helix 8	AA8	B	280	296	Right-handed alpha
Helix 9	AA9	B	305	310	Right-handed alpha
Helix 10	AB1	B	319	326	Right-handed alpha
Helix 11	AB2	B	327	334	Right-handed alpha
Helix 12	AB3	B	354	358	Right-handed 310
Helix 13	AB4	B	373	386	Right-handed alpha
Helix 14	AB5	B	407	426	Right-handed alpha
Helix 15	AB6	B	438	445	Right-handed alpha
Helix 16	AB7	B	448	457	Right-handed alpha
Helix 17	AB8	B	475	479	Right-handed 310
Helix 18	AB9	B	482	493	Right-handed alpha
Helix 19	AC1	B	494	499	Right-handed alpha
Helix 20	AC2	B	499	504	Right-handed alpha
Helix 21	AC3	B	525	535	Right-handed alpha
Helix 22	AC4	B	544	553	Right-handed alpha
Helix 23	AC5	B	555	568	Right-handed alpha
Helix 24	AC6	B	578	582	Right-handed 310
Helix 25	AC7	B	599	608	Right-handed alpha
Helix 26	AC8	B	649	661	Right-handed alpha
Helix 27	AC9	B	662	664	Right-handed 310
Helix 28	AD1	B	671	676	Right-handed alpha
Helix 29	AD2	B	683	704	Right-handed alpha
Helix 30	AD3	B	732	741	Right-handed alpha
Helix 31	AD4	B	750	763	Right-handed alpha
Helix 32	AD5	C	42	49	Right-handed alpha
Helix 33	AD6	C	61	65	Right-handed 310
Helix 34	AD7	C	85	93	Right-handed alpha
Helix 35	AD8	C	130	135	Right-handed alpha
Helix 36	AD9	C	135	140	Right-handed alpha
Helix 37	AE1	C	212	226	Right-handed alpha
Helix 38	AE2	C	226	233	Right-handed alpha
Helix 39	AE3	C	250	261	Right-handed alpha
Helix 40	AE4	C	270	275	Right-handed alpha
Helix 41	AE5	C	280	296	Right-handed alpha
Helix 42	AE6	C	305	310	Right-handed alpha
Helix 43	AE7	C	319	326	Right-handed alpha
Helix 44	AE8	C	327	332	Right-handed alpha
Helix 45	AE9	C	373	384	Right-handed alpha
Helix 46	AF1	C	396	401	Right-handed alpha
Helix 47	AF2	C	407	424	Right-handed alpha
Helix 48	AF3	C	438	445	Right-handed alpha
Helix 49	AF4	C	448	457	Right-handed alpha
Helix 50	AF5	C	482	499	Right-handed alpha
Helix 51	AF6	C	499	507	Right-handed alpha
Helix 52	AF7	C	523	535	Right-handed alpha
Helix 53	AF8	C	543	553	Right-handed alpha
Helix 54	AF9	C	555	568	Right-handed alpha
Helix 55	AG1	C	579	584	Right-handed alpha
Helix 56	AG2	C	599	607	Right-handed alpha
Helix 57	AG3	C	612	616	Right-handed 310
Helix 58	AG4	C	649	660	Right-handed alpha
Helix 59	AG5	C	673	677	Right-handed 310
Helix 60	AG6	C	683	703	Right-handed alpha
Helix 61	AG7	C	732	742	Right-handed alpha
Helix 62	AG8	C	751	763	Right-handed alpha
Helix 63	AG9	D	44	49	Right-handed alpha
Helix 64	AH1	D	61	65	Right-handed 310
Helix 65	AH2	D	85	93	Right-handed alpha
Helix 66	AH3	D	130	140	Right-handed alpha
Helix 67	AH4	D	209	221	Right-handed alpha
Helix 68	AH5	D	221	226	Right-handed alpha
Helix 69	AH6	D	226	233	Right-handed alpha
Helix 70	AH7	D	250	261	Right-handed alpha
Helix 71	AH8	D	270	275	Right-handed alpha
Helix 72	AH9	D	281	294	Right-handed alpha
Helix 73	AI1	D	295	297	Right-handed 310
Helix 74	AI2	D	305	310	Right-handed alpha
Helix 75	AI3	D	319	326	Right-handed alpha
Helix 76	AI4	D	327	333	Right-handed alpha
Helix 77	AI5	D	354	359	Right-handed 310
Helix 78	AI6	D	373	385	Right-handed alpha
Helix 79	AI7	D	396	401	Right-handed alpha
Helix 80	AI8	D	407	426	Right-handed alpha
Helix 81	AI9	D	448	457	Right-handed alpha
Helix 82	AJ1	D	482	495	Right-handed alpha
Helix 83	AJ2	D	500	505	Right-handed alpha
Helix 84	AJ3	D	523	534	Right-handed alpha
Helix 85	AJ4	D	544	552	Right-handed alpha
Helix 86	AJ5	D	556	568	Right-handed alpha
Helix 87	AJ6	D	579	584	Right-handed alpha
Helix 88	AJ7	D	599	607	Right-handed alpha
Helix 89	AJ8	D	649	659	Right-handed alpha
Helix 90	AJ9	D	672	677	Right-handed alpha
Helix 91	AK1	D	683	704	Right-handed alpha
Helix 92	AK2	D	732	741	Right-handed alpha
Helix 93	AK3	D	751	763	Right-handed alpha
Helix 94	AK4	E	45	50	Right-handed alpha
Helix 95	AK5	E	85	93	Right-handed alpha
Helix 96	AK6	E	134	139	Right-handed alpha
Helix 97	AK7	E	202	206	Right-handed 310
Helix 98	AK8	E	212	221	Right-handed alpha
Helix 99	AK9	E	228	234	Right-handed alpha
Helix 100	AL1	E	250	261	Right-handed alpha
Helix 101	AL2	E	270	275	Right-handed alpha
Helix 102	AL3	E	281	296	Right-handed alpha
Helix 103	AL4	E	313	317	Right-handed 310
Helix 104	AL5	E	318	319	Right-handed 310
Helix 105	AL6	E	320	326	Right-handed alpha
Helix 106	AL7	E	327	334	Right-handed alpha
Helix 107	AL8	E	373	385	Right-handed alpha
Helix 108	AL9	E	407	425	Right-handed alpha
Helix 109	AM1	E	439	444	Right-handed alpha
Helix 110	AM2	E	448	457	Right-handed alpha
Helix 111	AM3	E	482	494	Right-handed alpha
Helix 112	AM4	E	500	507	Right-handed alpha
Helix 113	AM5	E	523	534	Right-handed alpha
Helix 114	AM6	E	544	554	Right-handed alpha
Helix 115	AM7	E	556	569	Right-handed alpha
Helix 116	AM8	E	579	584	Right-handed 310
Helix 117	AM9	E	598	608	Right-handed alpha
Helix 118	AN1	E	612	615	Right-handed 310
Helix 119	AN2	E	649	661	Right-handed alpha
Helix 120	AN3	E	683	704	Right-handed alpha
Helix 121	AN4	E	732	740	Right-handed alpha
Helix 122	AN5	E	750	763	Right-handed alpha
Helix 123	AN6	A	43	48	Right-handed alpha
Helix 124	AN7	A	62	64	Right-handed 310
Helix 125	AN8	A	85	92	Right-handed alpha
Helix 126	AN9	A	106	108	Right-handed 310
Helix 127	AO1	A	130	139	Right-handed alpha
Helix 128	AO2	A	212	219	Right-handed alpha
Helix 129	AO3	A	220	226	Right-handed alpha
Helix 130	AO4	A	226	232	Right-handed alpha
Helix 131	AO5	A	250	263	Right-handed alpha
Helix 132	AO6	A	270	277	Right-handed alpha
Helix 133	AO7	A	280	292	Right-handed alpha
Helix 134	AO8	A	305	310	Right-handed alpha
Helix 135	AO9	A	319	326	Right-handed alpha
Helix 136	AP1	A	349	353	Right-handed 310
Helix 137	AP2	A	373	385	Right-handed alpha
Helix 138	AP3	A	407	426	Right-handed alpha
Helix 139	AP4	A	438	445	Right-handed alpha
Helix 140	AP5	A	448	457	Right-handed alpha
Helix 141	AP6	A	484	495	Right-handed alpha
Helix 142	AP7	A	500	506	Right-handed alpha
Helix 143	AP8	A	523	535	Right-handed alpha
Helix 144	AP9	A	543	554	Right-handed alpha
Helix 145	AQ1	A	555	568	Right-handed alpha
Helix 146	AQ2	A	578	582	Right-handed 310
Helix 147	AQ3	A	599	608	Right-handed alpha
Helix 148	AQ4	A	630	634	Right-handed 310
Helix 149	AQ5	A	649	661	Right-handed alpha
Helix 150	AQ6	A	671	676	Right-handed alpha
Helix 151	AQ7	A	683	704	Right-handed alpha
Helix 152	AQ8	A	732	741	Right-handed alpha
Helix 153	AQ9	A	750	763	Right-handed alpha
Helix 154	AR1	F	212	226	Right-handed alpha
Helix 155	AR2	F	226	231	Right-handed alpha
Helix 156	AR3	F	250	263	Right-handed alpha
Helix 157	AR4	F	270	276	Right-handed alpha
Helix 158	AR5	F	280	292	Right-handed alpha
Helix 159	AR6	F	305	310	Right-handed alpha
Helix 160	AR7	F	319	326	Right-handed alpha
Helix 161	AR8	F	327	332	Right-handed alpha
Helix 162	AR9	F	373	385	Right-handed alpha
Helix 163	AS1	F	398	403	Right-handed alpha
Helix 164	AS2	F	407	424	Right-handed alpha
Helix 165	AS3	F	438	444	Right-handed alpha
Helix 166	AS4	F	448	457	Right-handed alpha
Helix 167	AS5	F	459	463	Right-handed 310
Helix 168	AS6	F	475	479	Right-handed 310
Helix 169	AS7	F	482	499	Right-handed alpha
Helix 170	AS8	F	499	507	Right-handed alpha
Helix 171	AS9	F	523	535	Right-handed alpha
Helix 172	AT1	F	543	553	Right-handed alpha
Helix 173	AT2	F	555	568	Right-handed alpha
Helix 174	AT3	F	579	582	Right-handed 310
Helix 175	AT4	F	599	608	Right-handed alpha
Helix 176	AT5	F	625	629	Right-handed 310
Helix 177	AT6	F	649	664	Right-handed alpha
Helix 178	AT7	F	672	677	Right-handed alpha
Helix 179	AT8	F	683	704	Right-handed alpha
Helix 180	AT9	F	733	741	Right-handed alpha
Helix 181	AU1	F	749	763	Right-handed alpha

There are 34 sheets in PDB entry 7MDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	26	30	parallel
Strand 3	B	99	100	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	69	71	parallel
Strand 3	B	56	59	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	162	168	anti-parallel
Strand 3	B	151	153	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	173	175	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	342	346	parallel
Strand 3	B	299	304	parallel
Strand 4	B	265	269	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	538	543	anti-parallel
Strand 3	B	572	577	parallel
Strand 4	B	619	622	parallel
Strand 5	B	513	516	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	26	30	parallel
Strand 3	C	99	100	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	70	73	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	102	104	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	159	168	anti-parallel
Strand 3	C	153	156	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	C	299	304	parallel
Strand 3	C	342	346	parallel
Strand 4	C	241	244	parallel
Strand 5	C	365	368	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	623	first strand
Strand 2	C	513	517	parallel
Strand 3	C	641	644	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	542	first strand
Strand 2	C	572	576	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	26	28	parallel
Strand 3	D	99	100	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	70	73	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	102	104	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	160	168	anti-parallel
Strand 3	D	153	155	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	174	175	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	299	303	parallel
Strand 3	D	341	346	parallel
Strand 4	D	241	244	parallel
Strand 5	D	365	368	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	543	first strand
Strand 2	D	573	577	parallel
Strand 3	D	619	623	parallel
Strand 4	D	513	517	parallel
Strand 5	D	639	644	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	82	first strand
Strand 2	E	26	28	parallel
Strand 3	E	99	100	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	41	first strand
Strand 2	E	68	73	parallel
Strand 3	E	57	59	anti-parallel
Strand 4	E	102	104	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	160	168	anti-parallel
Strand 3	E	151	155	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	146	first strand
Strand 2	E	174	175	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	302	first strand
Strand 2	E	342	346	parallel
Strand 3	E	241	243	parallel
Strand 4	E	365	366	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	543	first strand
Strand 2	E	572	577	parallel
Strand 3	E	617	623	parallel
Strand 4	E	513	517	parallel
Strand 5	E	642	644	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	26	30	parallel
Strand 3	A	99	100	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	66	71	parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	102	104	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	173	175	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	161	164	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	299	302	parallel
Strand 3	A	341	346	parallel
Strand 4	A	241	244	parallel
Strand 5	A	365	368	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	538	542	anti-parallel
Strand 3	A	572	576	parallel
Strand 4	A	619	622	parallel
Strand 5	A	513	516	parallel
Strand 6	A	639	641	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	268	first strand
Strand 2	F	299	302	parallel
Strand 3	F	343	346	parallel
Strand 4	F	242	244	parallel
Strand 5	F	367	368	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	542	first strand
Strand 2	F	572	577	parallel
Strand 3	F	619	623	parallel
Strand 4	F	513	517	parallel
Strand 5	F	643	644	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDM