Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MDO entry

There are 6 chains in PDB entry 7MDO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 195	GLN 763
B	GLU 195	GLN 763
C	GLU 195	GLN 763
D	GLU 195	GLN 763
E	GLU 195	GLN 763
F	GLU 195	GLN 763

There are157 helices in PDB entry 7MDO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	202	206	Right-handed 310
Helix 2	AA2	A	209	226	Right-handed alpha
Helix 3	AA3	A	228	233	Right-handed alpha
Helix 4	AA4	A	250	263	Right-handed alpha
Helix 5	AA5	A	272	276	Right-handed 310
Helix 6	AA6	A	280	296	Right-handed alpha
Helix 7	AA7	A	305	310	Right-handed alpha
Helix 8	AA8	A	321	326	Right-handed alpha
Helix 9	AA9	A	327	333	Right-handed alpha
Helix 10	AB1	A	373	384	Right-handed alpha
Helix 11	AB2	A	396	402	Right-handed alpha
Helix 12	AB3	A	407	425	Right-handed alpha
Helix 13	AB4	A	438	445	Right-handed alpha
Helix 14	AB5	A	448	458	Right-handed alpha
Helix 15	AB6	A	482	493	Right-handed alpha
Helix 16	AB7	A	493	499	Right-handed alpha
Helix 17	AB8	A	499	506	Right-handed alpha
Helix 18	AB9	A	526	534	Right-handed alpha
Helix 19	AC1	A	543	553	Right-handed alpha
Helix 20	AC2	A	555	569	Right-handed alpha
Helix 21	AC3	A	579	582	Right-handed 310
Helix 22	AC4	A	599	608	Right-handed alpha
Helix 23	AC5	A	649	663	Right-handed alpha
Helix 24	AC6	A	671	677	Right-handed alpha
Helix 25	AC7	A	683	703	Right-handed alpha
Helix 26	AC8	A	732	741	Right-handed alpha
Helix 27	AC9	A	750	763	Right-handed alpha
Helix 28	AD1	B	209	226	Right-handed alpha
Helix 29	AD2	B	228	233	Right-handed alpha
Helix 30	AD3	B	250	263	Right-handed alpha
Helix 31	AD4	B	272	276	Right-handed 310
Helix 32	AD5	B	280	296	Right-handed alpha
Helix 33	AD6	B	305	310	Right-handed alpha
Helix 34	AD7	B	321	326	Right-handed alpha
Helix 35	AD8	B	327	333	Right-handed alpha
Helix 36	AD9	B	373	384	Right-handed alpha
Helix 37	AE1	B	396	402	Right-handed alpha
Helix 38	AE2	B	407	425	Right-handed alpha
Helix 39	AE3	B	438	445	Right-handed alpha
Helix 40	AE4	B	448	458	Right-handed alpha
Helix 41	AE5	B	482	493	Right-handed alpha
Helix 42	AE6	B	493	499	Right-handed alpha
Helix 43	AE7	B	499	506	Right-handed alpha
Helix 44	AE8	B	526	536	Right-handed alpha
Helix 45	AE9	B	543	553	Right-handed alpha
Helix 46	AF1	B	555	569	Right-handed alpha
Helix 47	AF2	B	579	582	Right-handed 310
Helix 48	AF3	B	599	608	Right-handed alpha
Helix 49	AF4	B	649	663	Right-handed alpha
Helix 50	AF5	B	671	677	Right-handed alpha
Helix 51	AF6	B	683	703	Right-handed alpha
Helix 52	AF7	B	732	741	Right-handed alpha
Helix 53	AF8	B	750	763	Right-handed alpha
Helix 54	AF9	C	202	206	Right-handed 310
Helix 55	AG1	C	209	226	Right-handed alpha
Helix 56	AG2	C	228	233	Right-handed alpha
Helix 57	AG3	C	250	263	Right-handed alpha
Helix 58	AG4	C	272	276	Right-handed 310
Helix 59	AG5	C	280	296	Right-handed alpha
Helix 60	AG6	C	305	310	Right-handed alpha
Helix 61	AG7	C	321	333	Right-handed alpha
Helix 62	AG8	C	373	384	Right-handed alpha
Helix 63	AG9	C	396	402	Right-handed alpha
Helix 64	AH1	C	407	425	Right-handed alpha
Helix 65	AH2	C	438	445	Right-handed alpha
Helix 66	AH3	C	448	458	Right-handed alpha
Helix 67	AH4	C	482	493	Right-handed alpha
Helix 68	AH5	C	493	499	Right-handed alpha
Helix 69	AH6	C	499	506	Right-handed alpha
Helix 70	AH7	C	526	535	Right-handed alpha
Helix 71	AH8	C	543	553	Right-handed alpha
Helix 72	AH9	C	555	569	Right-handed alpha
Helix 73	AI1	C	579	582	Right-handed 310
Helix 74	AI2	C	599	608	Right-handed alpha
Helix 75	AI3	C	649	663	Right-handed alpha
Helix 76	AI4	C	671	677	Right-handed alpha
Helix 77	AI5	C	683	703	Right-handed alpha
Helix 78	AI6	C	732	741	Right-handed alpha
Helix 79	AI7	C	750	763	Right-handed alpha
Helix 80	AI8	D	209	226	Right-handed alpha
Helix 81	AI9	D	228	233	Right-handed alpha
Helix 82	AJ1	D	250	263	Right-handed alpha
Helix 83	AJ2	D	272	276	Right-handed 310
Helix 84	AJ3	D	280	296	Right-handed alpha
Helix 85	AJ4	D	305	310	Right-handed alpha
Helix 86	AJ5	D	321	326	Right-handed alpha
Helix 87	AJ6	D	327	333	Right-handed alpha
Helix 88	AJ7	D	373	384	Right-handed alpha
Helix 89	AJ8	D	396	402	Right-handed alpha
Helix 90	AJ9	D	407	425	Right-handed alpha
Helix 91	AK1	D	438	445	Right-handed alpha
Helix 92	AK2	D	448	458	Right-handed alpha
Helix 93	AK3	D	482	493	Right-handed alpha
Helix 94	AK4	D	493	499	Right-handed alpha
Helix 95	AK5	D	499	506	Right-handed alpha
Helix 96	AK6	D	526	535	Right-handed alpha
Helix 97	AK7	D	543	553	Right-handed alpha
Helix 98	AK8	D	555	569	Right-handed alpha
Helix 99	AK9	D	578	582	Right-handed 310
Helix 100	AL1	D	599	608	Right-handed alpha
Helix 101	AL2	D	649	663	Right-handed alpha
Helix 102	AL3	D	671	677	Right-handed alpha
Helix 103	AL4	D	683	703	Right-handed alpha
Helix 104	AL5	D	732	741	Right-handed alpha
Helix 105	AL6	D	750	763	Right-handed alpha
Helix 106	AL7	E	202	206	Right-handed 310
Helix 107	AL8	E	209	226	Right-handed alpha
Helix 108	AL9	E	228	233	Right-handed alpha
Helix 109	AM1	E	250	263	Right-handed alpha
Helix 110	AM2	E	272	276	Right-handed 310
Helix 111	AM3	E	280	296	Right-handed alpha
Helix 112	AM4	E	305	310	Right-handed alpha
Helix 113	AM5	E	321	326	Right-handed alpha
Helix 114	AM6	E	327	333	Right-handed alpha
Helix 115	AM7	E	373	384	Right-handed alpha
Helix 116	AM8	E	396	402	Right-handed alpha
Helix 117	AM9	E	407	425	Right-handed alpha
Helix 118	AN1	E	438	445	Right-handed alpha
Helix 119	AN2	E	448	458	Right-handed alpha
Helix 120	AN3	E	482	493	Right-handed alpha
Helix 121	AN4	E	493	499	Right-handed alpha
Helix 122	AN5	E	499	506	Right-handed alpha
Helix 123	AN6	E	526	535	Right-handed alpha
Helix 124	AN7	E	543	553	Right-handed alpha
Helix 125	AN8	E	555	569	Right-handed alpha
Helix 126	AN9	E	579	582	Right-handed 310
Helix 127	AO1	E	599	608	Right-handed alpha
Helix 128	AO2	E	649	663	Right-handed alpha
Helix 129	AO3	E	671	676	Right-handed alpha
Helix 130	AO4	E	683	703	Right-handed alpha
Helix 131	AO5	E	732	741	Right-handed alpha
Helix 132	AO6	E	750	763	Right-handed alpha
Helix 133	AO7	F	209	226	Right-handed alpha
Helix 134	AO8	F	228	233	Right-handed alpha
Helix 135	AO9	F	250	263	Right-handed alpha
Helix 136	AP1	F	272	276	Right-handed 310
Helix 137	AP2	F	280	296	Right-handed alpha
Helix 138	AP3	F	305	310	Right-handed alpha
Helix 139	AP4	F	321	333	Right-handed alpha
Helix 140	AP5	F	373	384	Right-handed alpha
Helix 141	AP6	F	396	402	Right-handed alpha
Helix 142	AP7	F	407	425	Right-handed alpha
Helix 143	AP8	F	438	445	Right-handed alpha
Helix 144	AP9	F	448	458	Right-handed alpha
Helix 145	AQ1	F	482	493	Right-handed alpha
Helix 146	AQ2	F	493	499	Right-handed alpha
Helix 147	AQ3	F	499	506	Right-handed alpha
Helix 148	AQ4	F	526	535	Right-handed alpha
Helix 149	AQ5	F	543	553	Right-handed alpha
Helix 150	AQ6	F	555	569	Right-handed alpha
Helix 151	AQ7	F	579	582	Right-handed 310
Helix 152	AQ8	F	599	608	Right-handed alpha
Helix 153	AQ9	F	649	663	Right-handed alpha
Helix 154	AR1	F	671	677	Right-handed alpha
Helix 155	AR2	F	683	703	Right-handed alpha
Helix 156	AR3	F	732	741	Right-handed alpha
Helix 157	AR4	F	750	763	Right-handed alpha

There are 13 sheets in PDB entry 7MDO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	299	304	parallel
Strand 3	A	341	347	parallel
Strand 4	A	242	244	parallel
Strand 5	A	366	368	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	572	577	parallel
Strand 3	A	621	623	parallel
Strand 4	A	515	517	parallel
Strand 5	A	643	644	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	299	304	parallel
Strand 3	B	341	347	parallel
Strand 4	B	242	244	parallel
Strand 5	B	366	368	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	572	577	parallel
Strand 3	B	621	623	parallel
Strand 4	B	515	517	parallel
Strand 5	B	643	644	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	299	304	parallel
Strand 3	C	341	347	parallel
Strand 4	C	242	244	parallel
Strand 5	C	366	368	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	542	first strand
Strand 2	C	572	577	parallel
Strand 3	C	621	623	parallel
Strand 4	C	515	517	parallel
Strand 5	C	642	644	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	347	parallel
Strand 4	D	242	244	parallel
Strand 5	D	366	368	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	621	623	first strand
Strand 2	D	515	517	parallel
Strand 3	D	643	644	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	542	first strand
Strand 2	D	572	576	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	270	first strand
Strand 2	E	299	304	parallel
Strand 3	E	341	347	parallel
Strand 4	E	242	244	parallel
Strand 5	E	366	368	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	542	first strand
Strand 2	E	572	577	parallel
Strand 3	E	621	623	parallel
Strand 4	E	515	517	parallel
Strand 5	E	643	644	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	270	first strand
Strand 2	F	299	304	parallel
Strand 3	F	341	347	parallel
Strand 4	F	242	244	parallel
Strand 5	F	366	368	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	542	first strand
Strand 2	F	572	577	parallel
Strand 3	F	621	623	parallel
Strand 4	F	515	517	parallel
Strand 5	F	643	644	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MDO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDO