Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MDS entry

There are 2 chains in PDB entry 7MDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 59TYR 365
B
 LYS 55TYR 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7MDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 65Right-handed alpha
Helix 2
AA2
A
83 97Right-handed alpha
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
115 131Right-handed alpha
Helix 5
AA5
A
144 158Right-handed alpha
Helix 6
AA6
A
174 187Right-handed alpha
Helix 7
AA7
A
196 201Right-handed alpha
Helix 8
AA8
A
205 214Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
244 255Right-handed alpha
Helix 11
AB2
A
263 267Right-handed 310
Helix 12
AB3
A
268 278Right-handed alpha
Helix 13
AB4
A
281 296Right-handed alpha
Helix 14
AB5
A
301 311Right-handed alpha
Helix 15
AB6
A
326 341Right-handed alpha
Helix 16
AB7
A
342 345Right-handed 310
Helix 17
AB8
A
355 359Right-handed 310
Helix 18
AB9
B
56 65Right-handed alpha
Helix 19
AC1
B
83 97Right-handed alpha
Helix 20
AC2
B
110 114Right-handed 310
Helix 21
AC3
B
115 131Right-handed alpha
Helix 22
AC4
B
144 158Right-handed alpha
Helix 23
AC5
B
174 187Right-handed alpha
Helix 24
AC6
B
196 201Right-handed alpha
Helix 25
AC7
B
205 213Right-handed alpha
Helix 26
AC8
B
226 235Right-handed alpha
Helix 27
AC9
B
244 246Right-handed 310
Helix 28
AD1
B
247 255Right-handed alpha
Helix 29
AD2
B
263 267Right-handed 310
Helix 30
AD3
B
268 278Right-handed alpha
Helix 31
AD4
B
281 296Right-handed alpha
Helix 32
AD5
B
301 311Right-handed alpha
Helix 33
AD6
B
326 341Right-handed alpha
Helix 34
AD7
B
342 345Right-handed 310
Helix 35
AD8
B
355 359Right-handed 310
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There are 4 sheets in PDB entry 7MDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
101 104parallel
Strand 3
A
135 139parallel
Strand 4
A
162 166parallel
Strand 5
A
191 195parallel
Strand 6
A
218 223parallel
Strand 7
A
240 242parallel
Strand 8
A
259 262parallel
Strand 9
A
68 71parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
360 362parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 71first strand
Strand 2
B
101 104parallel
Strand 3
B
135 139parallel
Strand 4
B
162 166parallel
Strand 5
B
191 195parallel
Strand 6
B
218 223parallel
Strand 7
B
240 242parallel
Strand 8
B
259 262parallel
Strand 9
B
68 71parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
360 362parallel
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