Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MDU entry

There are 6 chains in PDB entry 7MDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1VAL 111
A
 ASN 33VAL 506
E
 VAL 2SER 112
F
 ALA 3VAL 106
L
 ASP 1GLU 105
B
 SER 519ASP 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7MDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
63 65Right-handed 310
Helix 2
AA2
H
73 75Right-handed 310
Helix 3
AA3
A
98 115Right-handed alpha
Helix 4
AA4
A
195 198Right-handed 310
Helix 5
AA5
A
335 350Right-handed alpha
Helix 6
AA6
A
368 373Right-handed alpha
Helix 7
AA7
A
475 484Right-handed alpha
Helix 8
AA8
E
28 32Right-handed 310
Helix 9
AA9
E
61 64Right-handed 310
Helix 10
AB1
E
73 75Right-handed 310
Helix 11
AB2
E
83 87Right-handed 310
Helix 12
AB3
L
79 83Right-handed 310
Helix 13
AB4
B
529 534Right-handed alpha
Helix 14
AB5
B
536 542Right-handed alpha
Helix 15
AB6
B
571 596Right-handed alpha
Helix 16
AB7
B
618 625Right-handed alpha
Helix 17
AB8
B
627 635Right-handed alpha
Helix 18
AB9
B
638 661Right-handed alpha
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There are 27 sheets in PDB entry 7MDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 5first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
46 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
88 95anti-parallel
Strand 5
H
99 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
46 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
88 95anti-parallel
Strand 5
H
107 109anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 499first strand
Strand 2
A
35 40anti-parallel
Strand 3
B
603 609anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
486 491anti-parallel
Strand 3
A
223 228anti-parallel
Strand 4
A
242 245anti-parallel
Strand 5
A
83 86anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
53 56parallel
Strand 3
A
216 218anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
237 239anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 177first strand
Strand 2
A
154 162anti-parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
190 193anti-parallel
Strand 5
A
181 183anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
432 435parallel
Strand 3
A
423 424anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
441 456anti-parallel
Strand 3
A
284 312anti-parallel
Strand 4
A
271 274anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 323first strand
Strand 2
A
284 312anti-parallel
Strand 3
A
441 456anti-parallel
Strand 4
A
259 261anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
441 456anti-parallel
Strand 3
A
465 470anti-parallel
Strand 4
A
358 361parallel
Strand 5
A
393 395anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
413 420anti-parallel
Strand 4
A
329 334anti-parallel
Strand 5
A
284 312anti-parallel
Strand 6
A
441 456anti-parallel
Strand 7
A
259 261anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
284 312anti-parallel
Strand 3
A
329 334anti-parallel
Strand 4
A
413 420anti-parallel
Strand 5
A
381 385anti-parallel
Strand 6
A
374 378anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
358 361anti-parallel
Strand 3
A
465 470parallel
Strand 4
A
441 456anti-parallel
Strand 5
A
284 312anti-parallel
Strand 6
A
271 274anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
413 420anti-parallel
Strand 4
A
329 334anti-parallel
Strand 5
A
284 312anti-parallel
Strand 6
A
315 323anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 323first strand
Strand 2
A
284 312anti-parallel
Strand 3
A
441 456anti-parallel
Strand 4
A
465 470anti-parallel
Strand 5
A
358 361parallel
Strand 6
A
393 395anti-parallel
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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
358 361anti-parallel
Strand 3
A
465 470parallel
Strand 4
A
441 456anti-parallel
Strand 5
A
284 312anti-parallel
Strand 6
A
329 334anti-parallel
Strand 7
A
413 420anti-parallel
Strand 8
A
381 385anti-parallel
Strand 9
A
374 378anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 8first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
67 72anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
107 111parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
57 59anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
107 111parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
100 103anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 24first strand
Strand 2
F
70 75anti-parallel
Strand 3
F
62 67anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 48first strand
Strand 2
F
33 38anti-parallel
Strand 3
F
85 91anti-parallel
Strand 4
F
96 98anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 48first strand
Strand 2
F
33 38anti-parallel
Strand 3
F
85 91anti-parallel
Strand 4
F
102 103anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
62 75anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
103 104parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
45 50anti-parallel
Strand 3
L
33 38anti-parallel
Strand 4
L
85 90anti-parallel
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