Analysis of interatomic Contacts of Structural Units in PDB entry:
7MDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MDY entry

There are 4 chains in PDB entry 7MDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 4GLN 414
A
 MET 1GLU 399
D
 LYS 3MET 229
C
 ILE 4MET 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7MDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 14Right-handed alpha
Helix 2
AA2
B
24 59Right-handed alpha
Helix 3
AA3
B
84 88Right-handed 310
Helix 4
AA4
B
137 142Right-handed alpha
Helix 5
AA5
B
153 158Right-handed alpha
Helix 6
AA6
B
199 202Right-handed 310
Helix 7
AA7
B
209 213Right-handed 310
Helix 8
AA8
B
230 235Right-handed alpha
Helix 9
AA9
B
254 259Right-handed 310
Helix 10
AB1
B
261 298Right-handed alpha
Helix 11
AB2
B
299 308Right-handed alpha
Helix 12
AB3
B
311 344Right-handed alpha
Helix 13
AB4
B
379 405Right-handed alpha
Helix 14
AB5
B
406 414Right-handed alpha
Helix 15
AB6
A
4 16Right-handed alpha
Helix 16
AB7
A
28 59Right-handed alpha
Helix 17
AB8
A
206 212Right-handed alpha
Helix 18
AB9
A
228 230Right-handed 310
Helix 19
AC1
A
231 238Right-handed alpha
Helix 20
AC2
A
250 252Right-handed 310
Helix 21
AC3
A
253 293Right-handed alpha
Helix 22
AC4
A
293 302Right-handed alpha
Helix 23
AC5
A
306 338Right-handed alpha
Helix 24
AC6
A
346 351Right-handed alpha
Helix 25
AC7
A
363 389Right-handed alpha
Helix 26
AC8
A
391 399Right-handed alpha
Helix 27
AC9
D
47 56Right-handed alpha
Helix 28
AD1
D
77 88Right-handed alpha
Helix 29
AD2
D
103 116Right-handed alpha
Helix 30
AD3
D
118 134Right-handed alpha
Helix 31
AD4
D
135 139Right-handed 310
Helix 32
AD5
D
147 161Right-handed alpha
Helix 33
AD6
D
177 195Right-handed alpha
Helix 34
AD7
D
208 212Right-handed 310
Helix 35
AD8
C
47 56Right-handed alpha
Helix 36
AD9
C
77 88Right-handed alpha
Helix 37
AE1
C
103 116Right-handed alpha
Helix 38
AE2
C
118 134Right-handed alpha
Helix 39
AE3
C
135 139Right-handed 310
Helix 40
AE4
C
147 161Right-handed alpha
Helix 41
AE5
C
177 195Right-handed alpha
Helix 42
AE6
C
208 212Right-handed 310
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There are 8 sheets in PDB entry 7MDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
112 118anti-parallel
Strand 3
B
204 207parallel
Strand 4
B
149 150anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
245 248anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
221 222anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
110 116anti-parallel
Strand 3
A
200 203parallel
Strand 4
A
143 145anti-parallel
Strand 5
A
180 186parallel
Strand 6
A
162 166anti-parallel
Strand 7
A
99 103anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
22 28anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 170first strand
Strand 2
D
198 202parallel
Strand 3
D
37 41parallel
Strand 4
D
216 218parallel
Strand 5
D
223 224anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 15first strand
Strand 2
C
22 28anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 170first strand
Strand 2
C
198 202parallel
Strand 3
C
37 41parallel
Strand 4
C
216 218parallel
Strand 5
C
223 224anti-parallel
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