Analysis of interatomic Contacts of Structural Units in PDB entry:
7ME2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ME2 entry

There are 2 chains in PDB entry 7ME2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 38HIS 318
B
 THR 38GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7ME2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 60Right-handed alpha
Helix 2
AA2
A
81 90Right-handed alpha
Helix 3
AA3
A
104 111Right-handed alpha
Helix 4
AA4
A
141 144Right-handed 310
Helix 5
AA5
A
145 164Right-handed alpha
Helix 6
AA6
A
167 184Right-handed alpha
Helix 7
AA7
A
185 193Right-handed alpha
Helix 8
AA8
A
197 200Right-handed 310
Helix 9
AA9
A
210 218Right-handed alpha
Helix 10
AB1
A
233 249Right-handed alpha
Helix 11
AB2
A
261 272Right-handed alpha
Helix 12
AB3
A
293 310Right-handed alpha
Helix 13
AB4
B
48 60Right-handed alpha
Helix 14
AB5
B
81 90Right-handed alpha
Helix 15
AB6
B
104 110Right-handed alpha
Helix 16
AB7
B
141 144Right-handed 310
Helix 17
AB8
B
145 164Right-handed alpha
Helix 18
AB9
B
167 194Right-handed alpha
Helix 19
AC1
B
197 200Right-handed 310
Helix 20
AC2
B
210 218Right-handed alpha
Helix 21
AC3
B
235 249Right-handed alpha
Helix 22
AC4
B
261 272Right-handed alpha
Helix 23
AC5
B
293 308Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7ME2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
42 46parallel
Strand 3
A
93 96parallel
Strand 4
A
117 119parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
220 225parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
A
274 279parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
42 46parallel
Strand 3
B
93 96parallel
Strand 4
B
117 119parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 207first strand
Strand 2
B
220 225parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 256first strand
Strand 2
B
274 279parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il