Analysis of interatomic Contacts of Structural Units in PDB entry:
7MES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MES entry

There are 2 chains in PDB entry 7MES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 32LEU 554
B
 SER 29GLY 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7MES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 58Right-handed alpha
Helix 2
AA2
A
98 119Right-handed alpha
Helix 3
AA3
A
120 137Right-handed alpha
Helix 4
AA4
A
139 152Right-handed alpha
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
163 182Right-handed alpha
Helix 7
AA7
A
212 226Right-handed alpha
Helix 8
AA8
A
235 237Right-handed 310
Helix 9
AA9
A
238 252Right-handed alpha
Helix 10
AB1
A
265 275Right-handed alpha
Helix 11
AB2
A
287 301Right-handed alpha
Helix 12
AB3
A
302 305Right-handed 310
Helix 13
AB4
A
328 342Right-handed alpha
Helix 14
AB5
A
343 346Right-handed 310
Helix 15
AB6
A
360 374Right-handed alpha
Helix 16
AB7
A
393 410Right-handed alpha
Helix 17
AB8
A
441 445Right-handed 310
Helix 18
AB9
A
459 461Right-handed 310
Helix 19
AC1
A
462 473Right-handed alpha
Helix 20
AC2
A
486 497Right-handed alpha
Helix 21
AC3
A
536 540Right-handed 310
Helix 22
AC4
B
44 58Right-handed alpha
Helix 23
AC5
B
98 119Right-handed alpha
Helix 24
AC6
B
120 137Right-handed alpha
Helix 25
AC7
B
139 152Right-handed alpha
Helix 26
AC8
B
154 162Right-handed alpha
Helix 27
AC9
B
163 181Right-handed alpha
Helix 28
AD1
B
212 226Right-handed alpha
Helix 29
AD2
B
235 237Right-handed 310
Helix 30
AD3
B
238 252Right-handed alpha
Helix 31
AD4
B
265 275Right-handed alpha
Helix 32
AD5
B
287 301Right-handed alpha
Helix 33
AD6
B
302 305Right-handed 310
Helix 34
AD7
B
328 342Right-handed alpha
Helix 35
AD8
B
343 346Right-handed 310
Helix 36
AD9
B
360 373Right-handed alpha
Helix 37
AE1
B
393 410Right-handed alpha
Helix 38
AE2
B
441 445Right-handed 310
Helix 39
AE3
B
459 461Right-handed 310
Helix 40
AE4
B
462 473Right-handed alpha
Helix 41
AE5
B
486 497Right-handed alpha
Helix 42
AE6
B
536 540Right-handed 310
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There are 12 sheets in PDB entry 7MES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
86 95parallel
Strand 3
A
78 83anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 73anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 199first strand
Strand 2
A
542 550anti-parallel
Strand 3
B
503 506parallel
Strand 4
B
479 483parallel
Strand 5
B
319 323parallel
Strand 6
B
351 357parallel
Strand 7
B
452 458parallel
Strand 8
B
432 436parallel
Strand 9
B
413 417anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
229 233parallel
Strand 3
A
203 207parallel
Strand 4
A
279 285parallel
Strand 5
A
310 314parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 417first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
452 458parallel
Strand 4
A
351 357parallel
Strand 5
A
319 323parallel
Strand 6
A
479 483parallel
Strand 7
A
503 506parallel
Strand 8
B
542 550parallel
Strand 9
B
191 199anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
428 429anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 477first strand
Strand 2
A
523 524anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
86 95parallel
Strand 3
B
78 83anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
71 73anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
229 233parallel
Strand 3
B
203 207parallel
Strand 4
B
279 285parallel
Strand 5
B
310 314parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
428 429anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 477first strand
Strand 2
B
523 524anti-parallel
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