Analysis of interatomic Contacts of Structural Units in PDB entry:
7MET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MET entry

There are 2 chains in PDB entry 7MET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7ARG 570
B
 VAL 7ARG 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7MET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
18 52Right-handed alpha
Helix 3
AA3
A
56 103Right-handed alpha
Helix 4
AA4
A
106 114Right-handed alpha
Helix 5
AA5
A
117 158Right-handed alpha
Helix 6
AA6
A
167 207Right-handed alpha
Helix 7
AA7
A
207 214Right-handed alpha
Helix 8
AA8
A
216 265Right-handed alpha
Helix 9
AA9
A
269 274Right-handed alpha
Helix 10
AB1
A
276 287Right-handed alpha
Helix 11
AB2
A
288 309Right-handed alpha
Helix 12
AB3
A
310 315Right-handed alpha
Helix 13
AB4
A
372 380Right-handed alpha
Helix 14
AB5
A
398 402Right-handed 310
Helix 15
AB6
A
403 410Right-handed alpha
Helix 16
AB7
A
424 429Right-handed alpha
Helix 17
AB8
A
438 447Right-handed alpha
Helix 18
AB9
A
448 450Right-handed 310
Helix 19
AC1
A
451 458Right-handed alpha
Helix 20
AC2
A
468 474Right-handed alpha
Helix 21
AC3
A
474 490Right-handed alpha
Helix 22
AC4
A
507 522Right-handed alpha
Helix 23
AC5
A
530 537Right-handed alpha
Helix 24
AC6
A
554 560Right-handed alpha
Helix 25
AC7
A
560 570Right-handed alpha
Helix 26
AC8
B
8 16Right-handed alpha
Helix 27
AC9
B
18 53Right-handed alpha
Helix 28
AD1
B
54 105Right-handed alpha
Helix 29
AD2
B
107 113Right-handed alpha
Helix 30
AD3
B
114 158Right-handed alpha
Helix 31
AD4
B
276 287Right-handed alpha
Helix 32
AD5
B
288 296Right-handed alpha
Helix 33
AD6
B
297 316Right-handed alpha
Helix 34
AD7
B
345 347Right-handed 310
Helix 35
AD8
B
374 382Right-handed alpha
Helix 36
AD9
B
403 410Right-handed alpha
Helix 37
AE1
B
424 430Right-handed alpha
Helix 38
AE2
B
438 449Right-handed alpha
Helix 39
AE3
B
451 458Right-handed alpha
Helix 40
AE4
B
474 490Right-handed alpha
Helix 41
AE5
B
507 520Right-handed alpha
Helix 42
AE6
B
530 537Right-handed alpha
Helix 43
AE7
B
553 561Right-handed alpha
Helix 44
AE8
B
561 570Right-handed alpha
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There are 6 sheets in PDB entry 7MET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
349 354anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
539 542parallel
Strand 3
A
551 553anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
493 495parallel
Strand 3
A
523 524parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 338first strand
Strand 2
B
355 358anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
348 351anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 414first strand
Strand 2
B
493 496parallel
Strand 3
B
523 526parallel
Strand 4
B
364 368parallel
Strand 5
B
539 544parallel
Strand 6
B
547 550anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il