Analysis of interatomic Contacts of Structural Units in PDB entry:
7MF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MF3 entry

There are 8 chains in PDB entry 7MF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 29	ALA 949
B	TRP 29	ALA 949
C	ASP 2	GLY 150
D	PRO 14	ASP 171
E	GLN 15	ASP 171
F	ASP 2	GLY 150
G	GLN 1412	ALA 1623
H	GLN 1413	ALA 1623

There are104 helices in PDB entry 7MF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	92	Right-handed 310
Helix 2	AA2	A	96	110	Right-handed alpha
Helix 3	AA3	A	134	139	Right-handed alpha
Helix 4	AA4	A	140	142	Right-handed 310
Helix 5	AA5	A	152	168	Right-handed alpha
Helix 6	AA6	A	182	198	Right-handed alpha
Helix 7	AA7	A	219	235	Right-handed alpha
Helix 8	AA8	A	287	295	Right-handed alpha
Helix 9	AA9	A	298	304	Right-handed alpha
Helix 10	AB1	A	309	313	Right-handed 310
Helix 11	AB2	A	327	343	Right-handed alpha
Helix 12	AB3	A	345	362	Right-handed alpha
Helix 13	AB4	A	363	365	Right-handed 310
Helix 14	AB5	A	381	392	Right-handed alpha
Helix 15	AB6	A	394	404	Right-handed alpha
Helix 16	AB7	A	419	449	Right-handed alpha
Helix 17	AB8	A	476	498	Right-handed alpha
Helix 18	AB9	A	498	508	Right-handed alpha
Helix 19	AC1	A	521	529	Right-handed alpha
Helix 20	AC2	A	537	546	Right-handed alpha
Helix 21	AC3	A	552	564	Right-handed alpha
Helix 22	AC4	A	596	603	Right-handed alpha
Helix 23	AC5	A	606	615	Right-handed alpha
Helix 24	AC6	A	618	627	Right-handed alpha
Helix 25	AC7	A	658	677	Right-handed alpha
Helix 26	AC8	A	697	707	Right-handed alpha
Helix 27	AC9	A	709	719	Right-handed alpha
Helix 28	AD1	A	727	735	Right-handed alpha
Helix 29	AD2	A	748	761	Right-handed alpha
Helix 30	AD3	A	763	765	Right-handed 310
Helix 31	AD4	A	778	783	Right-handed 310
Helix 32	AD5	A	784	792	Right-handed alpha
Helix 33	AD6	A	792	840	Right-handed alpha
Helix 34	AD7	A	840	846	Right-handed alpha
Helix 35	AD8	A	847	854	Right-handed alpha
Helix 36	AD9	A	854	949	Right-handed alpha
Helix 37	AE1	B	97	110	Right-handed alpha
Helix 38	AE2	B	134	141	Right-handed alpha
Helix 39	AE3	B	152	167	Right-handed alpha
Helix 40	AE4	B	184	198	Right-handed alpha
Helix 41	AE5	B	218	234	Right-handed alpha
Helix 42	AE6	B	273	277	Right-handed 310
Helix 43	AE7	B	287	294	Right-handed alpha
Helix 44	AE8	B	298	305	Right-handed alpha
Helix 45	AE9	B	328	343	Right-handed alpha
Helix 46	AF1	B	345	364	Right-handed alpha
Helix 47	AF2	B	381	390	Right-handed alpha
Helix 48	AF3	B	394	404	Right-handed alpha
Helix 49	AF4	B	419	450	Right-handed alpha
Helix 50	AF5	B	476	509	Right-handed alpha
Helix 51	AF6	B	521	527	Right-handed alpha
Helix 52	AF7	B	536	547	Right-handed alpha
Helix 53	AF8	B	551	564	Right-handed alpha
Helix 54	AF9	B	596	602	Right-handed alpha
Helix 55	AG1	B	607	615	Right-handed alpha
Helix 56	AG2	B	620	627	Right-handed alpha
Helix 57	AG3	B	661	675	Right-handed alpha
Helix 58	AG4	B	697	709	Right-handed alpha
Helix 59	AG5	B	709	720	Right-handed alpha
Helix 60	AG6	B	727	734	Right-handed alpha
Helix 61	AG7	B	748	761	Right-handed alpha
Helix 62	AG8	B	763	767	Right-handed 310
Helix 63	AG9	B	779	839	Right-handed alpha
Helix 64	AH1	B	839	845	Right-handed alpha
Helix 65	AH2	B	847	853	Right-handed alpha
Helix 66	AH3	B	855	948	Right-handed alpha
Helix 67	AH4	C	4	18	Right-handed alpha
Helix 68	AH5	C	27	38	Right-handed alpha
Helix 69	AH6	C	45	52	Right-handed alpha
Helix 70	AH7	C	65	78	Right-handed alpha
Helix 71	AH8	C	84	96	Right-handed alpha
Helix 72	AH9	C	104	114	Right-handed alpha
Helix 73	AI1	C	121	127	Right-handed alpha
Helix 74	AI2	C	140	148	Right-handed alpha
Helix 75	AI3	D	27	41	Right-handed alpha
Helix 76	AI4	D	49	61	Right-handed alpha
Helix 77	AI5	D	68	76	Right-handed alpha
Helix 78	AI6	D	81	91	Right-handed alpha
Helix 79	AI7	D	98	110	Right-handed alpha
Helix 80	AI8	D	118	128	Right-handed alpha
Helix 81	AI9	D	134	139	Right-handed alpha
Helix 82	AJ1	D	139	144	Right-handed alpha
Helix 83	AJ2	D	155	163	Right-handed alpha
Helix 84	AJ3	E	26	41	Right-handed alpha
Helix 85	AJ4	E	49	61	Right-handed alpha
Helix 86	AJ5	E	67	74	Right-handed alpha
Helix 87	AJ6	E	83	93	Right-handed alpha
Helix 88	AJ7	E	98	110	Right-handed alpha
Helix 89	AJ8	E	119	127	Right-handed alpha
Helix 90	AJ9	E	135	145	Right-handed alpha
Helix 91	AK1	E	148	150	Right-handed 310
Helix 92	AK2	E	154	164	Right-handed alpha
Helix 93	AK3	F	4	18	Right-handed alpha
Helix 94	AK4	F	27	38	Right-handed alpha
Helix 95	AK5	F	45	50	Right-handed alpha
Helix 96	AK6	F	65	77	Right-handed alpha
Helix 97	AK7	F	84	96	Right-handed alpha
Helix 98	AK8	F	104	115	Right-handed alpha
Helix 99	AK9	F	120	128	Right-handed alpha
Helix 100	AL1	F	141	148	Right-handed alpha
Helix 101	AL2	G	1413	1527	Right-handed alpha
Helix 102	AL3	G	1532	1623	Right-handed alpha
Helix 103	AL4	H	1414	1524	Right-handed alpha
Helix 104	AL5	H	1535	1621	Right-handed alpha

There are 14 sheets in PDB entry 7MF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	43	49	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	76	77	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	120	124	anti-parallel
Strand 3	A	681	685	parallel
Strand 4	A	174	177	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	461	462	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	255	first strand
Strand 2	A	264	270	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	376	377	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	414	415	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	584	first strand
Strand 2	A	589	590	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	726	first strand
Strand 2	A	773	776	anti-parallel
Strand 3	A	767	768	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	44	47	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	67	70	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	120	124	anti-parallel
Strand 3	B	681	685	parallel
Strand 4	B	171	176	parallel
Strand 5	B	459	465	parallel
Strand 6	B	250	256	anti-parallel
Strand 7	B	267	268	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	585	first strand
Strand 2	B	588	593	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	726	first strand
Strand 2	B	773	775	anti-parallel
Strand 3	B	768	769	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	118	first strand
Strand 2	E	152	153	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MF3