Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MFD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7MFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 156SER 364
A
 ALA 366ALA 728
A
 GLU 730PHE 738
B
 ALA 52GLN 383
C
 ASP 2SER 230
D
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 7MFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 188Right-handed alpha
Helix 2
AA2
A
213 217Right-handed 310
Helix 3
AA3
A
269 273Right-handed 310
Helix 4
AA4
A
491 506Right-handed alpha
Helix 5
AA5
A
536 543Right-handed alpha
Helix 6
AA6
A
549 570Right-handed alpha
Helix 7
AA9
A
621 627Right-handed alpha
Helix 8
AB1
A
639 652Right-handed alpha
Helix 9
AB2
A
662 672Right-handed alpha
Helix 10
AB3
A
677 681Right-handed 310
Helix 11
AB4
A
686 697Right-handed alpha
Helix 12
AB6
A
706 720Right-handed alpha
Helix 13
AB7
A
721 725Right-handed 310
Helix 14
AB8
B
52 58Right-handed alpha
Helix 15
AB9
B
64 66Right-handed 310
Helix 16
AC1
B
104 113Right-handed alpha
Helix 17
AC2
B
114 120Right-handed 310
Helix 18
AC3
B
150 159Right-handed alpha
Helix 19
AC4
B
162 185Right-handed alpha
Helix 20
AC5
B
192 196Right-handed 310
Helix 21
AC6
B
212 219Right-handed alpha
Helix 22
AC7
B
231 236Right-handed alpha
Helix 23
AC8
B
240 258Right-handed alpha
Helix 24
AC9
B
311 318Right-handed alpha
Helix 25
AD1
B
331 339Right-handed alpha
Helix 26
AD2
B
353 358Right-handed alpha
Helix 27
AD3
B
360 365Right-handed alpha
Helix 28
AD4
B
372 377Right-handed alpha
Helix 29
AD5
C
3 15Right-handed alpha
Helix 30
AD6
C
19 31Right-handed alpha
Helix 31
AD7
C
37 67Right-handed alpha
Helix 32
AD8
C
76 102Right-handed alpha
Helix 33
AD9
C
105 109Right-handed 310
Helix 34
AE1
C
111 133Right-handed alpha
Helix 35
AE2
C
135 160Right-handed alpha
Helix 36
AE3
C
164 180Right-handed alpha
Helix 37
AE4
C
185 202Right-handed alpha
Helix 38
AE5
C
211 229Right-handed alpha
Helix 39
AE6
D
3 12Right-handed alpha
Helix 40
AE7
D
18 31Right-handed alpha
Helix 41
AE8
D
37 68Right-handed alpha
Helix 42
AE9
D
74 104Right-handed alpha
Helix 43
AF1
D
111 133Right-handed alpha
Helix 44
AF2
D
138 157Right-handed alpha
Helix 45
AF3
D
164 181Right-handed alpha
Helix 46
AF4
D
184 203Right-handed alpha
Helix 47
AF5
D
207 229Right-handed alpha
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There are 7 sheets in PDB entry 7MFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
166 169anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
223 226anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
257 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 462first strand
Strand 2
A
472 475anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
516 518anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 75first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
131 135anti-parallel
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