Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MFE entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7MFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 156SER 364
A
 ALA 366ALA 728
A
 GLU 730PHE 738
C
 ASP 2SER 230
B
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7MFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 188Right-handed alpha
Helix 2
AA2
A
213 217Right-handed 310
Helix 3
AA4
A
491 506Right-handed alpha
Helix 4
AA5
A
536 543Right-handed alpha
Helix 5
AA6
A
549 570Right-handed alpha
Helix 6
AA9
A
621 627Right-handed alpha
Helix 7
AB1
A
639 652Right-handed alpha
Helix 8
AB2
A
662 672Right-handed alpha
Helix 9
AB3
A
677 681Right-handed 310
Helix 10
AB2
A
686 697Right-handed alpha
Helix 11
AB6
A
706 720Right-handed alpha
Helix 12
AB7
A
721 725Right-handed 310
Helix 13
AB4
C
3 16Right-handed alpha
Helix 14
AB5
C
19 31Right-handed alpha
Helix 15
AB6
C
37 68Right-handed alpha
Helix 16
AB7
C
74 104Right-handed alpha
Helix 17
AB8
C
111 131Right-handed alpha
Helix 18
AB9
C
134 137Right-handed 310
Helix 19
AC1
C
138 160Right-handed alpha
Helix 20
AC2
C
164 180Right-handed alpha
Helix 21
AC3
C
184 198Right-handed alpha
Helix 22
AC4
C
210 230Right-handed alpha
Helix 23
AC5
B
3 15Right-handed alpha
Helix 24
AC6
B
19 31Right-handed alpha
Helix 25
AC7
B
37 67Right-handed alpha
Helix 26
AC8
B
73 104Right-handed alpha
Helix 27
AC9
B
111 133Right-handed alpha
Helix 28
AD1
B
138 160Right-handed alpha
Helix 29
AD2
B
164 181Right-handed alpha
Helix 30
AD3
B
184 203Right-handed alpha
Helix 31
AD4
B
207 230Right-handed alpha
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There are 6 sheets in PDB entry 7MFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
166 169anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
223 226anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
257 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 462first strand
Strand 2
A
472 475anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
516 518anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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