Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MFF entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7MFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 2SER 230
D
 MET 1SER 230
A
 ASP 449ALA 728
A
 GLU 730SER 732
B
 ASP 449ALA 728
B
 GLU 730LEU 733
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7MFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
3 16Right-handed alpha
Helix 2
AA2
C
18 32Right-handed alpha
Helix 3
AA3
C
37 68Right-handed alpha
Helix 4
AA4
C
72 105Right-handed alpha
Helix 5
AA5
C
111 133Right-handed alpha
Helix 6
AA6
C
135 160Right-handed alpha
Helix 7
AA7
C
164 181Right-handed alpha
Helix 8
AA8
C
184 202Right-handed alpha
Helix 9
AA9
C
207 230Right-handed alpha
Helix 10
AB1
D
2 16Right-handed alpha
Helix 11
AB2
D
18 31Right-handed alpha
Helix 12
AB3
D
37 67Right-handed alpha
Helix 13
AB4
D
74 104Right-handed alpha
Helix 14
AB5
D
111 131Right-handed alpha
Helix 15
AB6
D
135 160Right-handed alpha
Helix 16
AB7
D
164 181Right-handed alpha
Helix 17
AB8
D
184 201Right-handed alpha
Helix 18
AB9
D
210 229Right-handed alpha
Helix 19
AC1
A
491 506Right-handed alpha
Helix 20
AC2
A
537 543Right-handed alpha
Helix 21
AC3
A
549 570Right-handed alpha
Helix 22
AC4
A
578 580Right-handed 310
Helix 23
AC5
A
621 625Right-handed 310
Helix 24
AC6
A
634 652Right-handed alpha
Helix 25
AC7
A
662 671Right-handed alpha
Helix 26
AC8
A
677 681Right-handed 310
Helix 27
AC9
A
686 697Right-handed alpha
Helix 28
AD1
A
706 720Right-handed alpha
Helix 29
AD2
B
491 506Right-handed alpha
Helix 30
AD3
B
536 543Right-handed alpha
Helix 31
AD4
B
549 570Right-handed alpha
Helix 32
AD5
B
586 588Right-handed 310
Helix 33
AD6
B
621 626Right-handed alpha
Helix 34
AD7
B
634 652Right-handed alpha
Helix 35
AD8
B
662 671Right-handed alpha
Helix 36
AD9
B
686 697Right-handed alpha
Helix 37
AE1
B
700 704Right-handed 310
Helix 38
AE2
B
706 721Right-handed alpha
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There are 4 sheets in PDB entry 7MFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
582 585anti-parallel
Strand 3
A
589 592anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 465first strand
Strand 2
B
470 472anti-parallel
Strand 3
B
480 484anti-parallel
Strand 4
B
526 530anti-parallel
Strand 5
B
516 520anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 585first strand
Strand 2
B
589 592anti-parallel
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