Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MFP entry

There are 4 chains in PDB entry 7MFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ASN 352
B	GLY -1	ASN 352
C	GLY 2	ASN 352
D	LYS 5	ASN 352

There are 62 helices in PDB entry 7MFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	15	30	Right-handed alpha
Helix 3	AA3	A	37	51	Right-handed alpha
Helix 4	AA4	A	63	80	Right-handed alpha
Helix 5	AA5	A	92	101	Right-handed 310
Helix 6	AA6	A	115	120	Right-handed 310
Helix 7	AA7	A	132	135	Right-handed 310
Helix 8	AA8	A	138	150	Right-handed alpha
Helix 9	AA9	A	171	173	Right-handed 310
Helix 10	AB1	A	201	208	Right-handed alpha
Helix 11	AB2	A	209	211	Right-handed 310
Helix 12	AB3	A	214	221	Right-handed 310
Helix 13	AB4	A	233	265	Right-handed alpha
Helix 14	AB5	A	295	299	Right-handed 310
Helix 15	AB6	A	314	323	Right-handed alpha
Helix 16	AB7	A	334	352	Right-handed alpha
Helix 17	AB8	B	15	30	Right-handed alpha
Helix 18	AB9	B	38	51	Right-handed alpha
Helix 19	AC1	B	63	80	Right-handed alpha
Helix 20	AC2	B	92	101	Right-handed 310
Helix 21	AC3	B	115	120	Right-handed 310
Helix 22	AC4	B	132	135	Right-handed 310
Helix 23	AC5	B	138	150	Right-handed alpha
Helix 24	AC6	B	171	173	Right-handed 310
Helix 25	AC7	B	201	208	Right-handed alpha
Helix 26	AC8	B	209	211	Right-handed 310
Helix 27	AC9	B	214	221	Right-handed 310
Helix 28	AD1	B	233	265	Right-handed alpha
Helix 29	AD2	B	295	299	Right-handed 310
Helix 30	AD3	B	314	323	Right-handed alpha
Helix 31	AD4	B	334	351	Right-handed alpha
Helix 32	AD5	B	352	352	Right-handed 310
Helix 33	AD6	C	2	6	Right-handed 310
Helix 34	AD7	C	15	30	Right-handed alpha
Helix 35	AD8	C	38	51	Right-handed alpha
Helix 36	AD9	C	63	80	Right-handed alpha
Helix 37	AE1	C	92	101	Right-handed 310
Helix 38	AE2	C	115	120	Right-handed 310
Helix 39	AE3	C	132	135	Right-handed 310
Helix 40	AE4	C	138	150	Right-handed alpha
Helix 41	AE5	C	171	173	Right-handed 310
Helix 42	AE6	C	201	208	Right-handed alpha
Helix 43	AE7	C	209	211	Right-handed 310
Helix 44	AE8	C	214	221	Right-handed 310
Helix 45	AE9	C	233	265	Right-handed alpha
Helix 46	AF1	C	295	299	Right-handed 310
Helix 47	AF2	C	314	323	Right-handed alpha
Helix 48	AF3	C	334	351	Right-handed alpha
Helix 49	AF4	D	15	30	Right-handed alpha
Helix 50	AF5	D	38	51	Right-handed alpha
Helix 51	AF6	D	63	80	Right-handed alpha
Helix 52	AF7	D	92	101	Right-handed 310
Helix 53	AF8	D	115	120	Right-handed 310
Helix 54	AF9	D	132	135	Right-handed 310
Helix 55	AG1	D	138	150	Right-handed alpha
Helix 56	AG2	D	171	173	Right-handed 310
Helix 57	AG3	D	201	209	Right-handed alpha
Helix 58	AG4	D	214	221	Right-handed 310
Helix 59	AG5	D	233	265	Right-handed alpha
Helix 60	AG6	D	295	299	Right-handed 310
Helix 61	AG7	D	314	323	Right-handed alpha
Helix 62	AG8	D	334	352	Right-handed alpha

There are 12 sheets in PDB entry 7MFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	176	180	anti-parallel
Strand 4	A	152	156	parallel
Strand 5	A	126	130	parallel
Strand 6	A	85	88	parallel
Strand 7	A	104	106	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	168	169	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	285	290	anti-parallel
Strand 3	A	324	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	176	180	anti-parallel
Strand 4	B	152	156	parallel
Strand 5	B	126	130	parallel
Strand 6	B	85	88	parallel
Strand 7	B	104	106	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	168	169	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	285	290	anti-parallel
Strand 3	B	324	328	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	61	first strand
Strand 2	C	193	198	anti-parallel
Strand 3	C	176	180	anti-parallel
Strand 4	C	152	156	parallel
Strand 5	C	126	130	parallel
Strand 6	C	85	88	parallel
Strand 7	C	104	106	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	168	169	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	286	290	anti-parallel
Strand 3	C	324	327	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	193	198	anti-parallel
Strand 3	D	176	180	anti-parallel
Strand 4	D	152	156	parallel
Strand 5	D	126	130	parallel
Strand 6	D	85	88	parallel
Strand 7	D	104	106	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	168	169	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	285	290	anti-parallel
Strand 3	D	324	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFP