Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MFR entry

There are 6 chains in PDB entry 7MFR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 0	GLU 218
B	GLN 1	SER 215
X	ASP 0	GLU 218
Y	GLN 1	LYS 214
P	GLY 1	MET 3
Q	GLY 1	MET 3

There are 16 helices in PDB entry 7MFR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	126	131	Right-handed alpha
Helix 4	AA4	A	188	194	Right-handed alpha
Helix 5	AA5	B	27	31	Right-handed 310
Helix 6	AA6	B	83	87	Right-handed 310
Helix 7	AA7	B	156	158	Right-handed 310
Helix 8	AA8	B	185	189	Right-handed 310
Helix 9	AA9	B	201	204	Right-handed 310
Helix 10	AB1	X	28	32	Right-handed 310
Helix 11	AB2	X	80	84	Right-handed 310
Helix 12	AB3	X	126	133	Right-handed alpha
Helix 13	AB4	X	188	193	Right-handed alpha
Helix 14	AB5	Y	83	87	Right-handed 310
Helix 15	AB6	Y	187	189	Right-handed 310
Helix 16	AB7	Y	201	204	Right-handed 310

There are 22 sheets in PDB entry 7MFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	63	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	112	parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	112	parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	101	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	134	144	anti-parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	164	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	196	202	anti-parallel
Strand 4	A	210	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	17	24	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	66	71	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	32	38	anti-parallel
Strand 5	B	45	50	anti-parallel
Strand 6	B	56	58	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	101	103	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	163	165	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	195	200	anti-parallel
Strand 3	B	205	210	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	3	5	first strand
Strand 2	X	18	24	anti-parallel
Strand 3	X	71	76	anti-parallel
Strand 4	X	63	68	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	13	first strand
Strand 2	X	107	112	parallel
Strand 3	X	86	92	anti-parallel
Strand 4	X	34	39	anti-parallel
Strand 5	X	45	49	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	13	first strand
Strand 2	X	107	112	parallel
Strand 3	X	86	92	anti-parallel
Strand 4	X	101	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	119	123	first strand
Strand 2	X	134	144	anti-parallel
Strand 3	X	178	187	anti-parallel
Strand 4	X	164	168	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	158	160	first strand
Strand 2	X	150	155	anti-parallel
Strand 3	X	196	202	anti-parallel
Strand 4	X	210	215	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	2	6	first strand
Strand 2	Y	17	24	anti-parallel
Strand 3	Y	74	79	anti-parallel
Strand 4	Y	66	71	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	11	first strand
Strand 2	Y	107	111	parallel
Strand 3	Y	88	95	anti-parallel
Strand 4	Y	32	38	anti-parallel
Strand 5	Y	44	50	anti-parallel
Strand 6	Y	56	58	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	11	first strand
Strand 2	Y	107	111	parallel
Strand 3	Y	88	95	anti-parallel
Strand 4	Y	101	103	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	124	first strand
Strand 2	Y	135	145	anti-parallel
Strand 3	Y	176	185	anti-parallel
Strand 4	Y	163	165	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	124	first strand
Strand 2	Y	135	145	anti-parallel
Strand 3	Y	176	185	anti-parallel
Strand 4	Y	169	170	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	151	154	first strand
Strand 2	Y	194	200	anti-parallel
Strand 3	Y	205	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MFR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MFR