Analysis of interatomic Contacts of Structural Units in PDB entry:
7MGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MGV entry

There are 5 chains in PDB entry 7MGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 333
V
 LYS 1GLN 12
U
 LYS 1GLN 12
B
 MET 1LEU 333
T
 THR 1GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7MGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
89 111Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
127 139Right-handed alpha
Helix 7
AA7
A
150 162Right-handed alpha
Helix 8
AA8
A
191 202Right-handed 310
Helix 9
AA9
A
232 239Right-handed alpha
Helix 10
AB1
A
240 245Right-handed 310
Helix 11
AB2
A
248 252Right-handed 310
Helix 12
AB3
A
259 274Right-handed alpha
Helix 13
AB4
A
301 306Right-handed alpha
Helix 14
AB5
A
311 322Right-handed alpha
Helix 15
AB6
V
3 7Right-handed 310
Helix 16
AB7
U
3 7Right-handed 310
Helix 17
AB8
B
12 27Right-handed alpha
Helix 18
AB9
B
89 91Right-handed 310
Helix 19
AC1
B
92 110Right-handed alpha
Helix 20
AC2
B
118 125Right-handed alpha
Helix 21
AC3
B
127 139Right-handed alpha
Helix 22
AC4
B
150 161Right-handed alpha
Helix 23
AC5
B
195 201Right-handed 310
Helix 24
AC6
B
241 244Right-handed 310
Helix 25
AC7
B
245 250Right-handed alpha
Helix 26
AC8
B
259 274Right-handed alpha
Helix 27
AC9
B
301 306Right-handed alpha
Helix 28
AD1
B
311 322Right-handed alpha
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There are 8 sheets in PDB entry 7MGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
2 8parallel
Strand 3
A
71 74parallel
Strand 4
A
114 116parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
43 49anti-parallel
Strand 4
B
145 148anti-parallel
Strand 5
B
204 208anti-parallel
Strand 6
B
164 167anti-parallel
Strand 7
B
186 187anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
164 167anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
145 148anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
52 59anti-parallel
Strand 7
B
62 65anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
179 183anti-parallel
Strand 3
U
9 11anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
214 221anti-parallel
Strand 4
A
277 284anti-parallel
Strand 5
A
290 296anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
9 11first strand
Strand 2
B
179 183anti-parallel
Strand 3
B
174 176anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
3 8parallel
Strand 3
B
71 74parallel
Strand 4
B
114 116parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
224 230anti-parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
277 284anti-parallel
Strand 5
B
290 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il