Analysis of interatomic Contacts of Structural Units in PDB entry:
7MHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MHV entry

There are 2 chains in PDB entry 7MHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4HIS 206
A
 ASN 208SER 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 7MHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
42 64Right-handed alpha
Helix 4
AA4
A
66 68Right-handed 310
Helix 5
AA5
A
75 92Right-handed alpha
Helix 6
AA6
A
93 95Right-handed 310
Helix 7
AA7
A
105 118Right-handed alpha
Helix 8
AA8
A
134 142Right-handed alpha
Helix 9
AA9
A
163 174Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
246 263Right-handed alpha
Helix 12
AB3
A
263 283Right-handed alpha
Helix 13
AB4
A
310 318Right-handed alpha
Helix 14
AB5
A
338 343Right-handed alpha
Helix 15
AB6
A
346 352Right-handed alpha
Helix 16
AB7
A
363 384Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7MHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
321 322parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
177 181parallel
Strand 5
A
146 150parallel
Strand 6
A
97 101parallel
Strand 7
A
121 125parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
353 357anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il