Analysis of interatomic Contacts of Structural Units in PDB entry:
7MI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MI5 entry

There are 8 chains in PDB entry 7MI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	THR 558
B	GLY 219	THR 558
C	LEU 197	THR 558
D	GLY 219	THR 558
E	MET 1	VAL 95
F	MET 1	VAL 95
G	A 2	T 27
H	T 2	T 35

There are 68 helices in PDB entry 7MI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	22	Right-handed alpha
Helix 2	AA2	A	22	32	Right-handed alpha
Helix 3	AA3	A	38	53	Right-handed alpha
Helix 4	AA4	A	109	113	Right-handed 310
Helix 5	AA5	A	114	131	Right-handed alpha
Helix 6	AA6	A	155	175	Right-handed alpha
Helix 7	AA7	A	186	190	Right-handed 310
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	197	205	Right-handed alpha
Helix 10	AB1	A	269	279	Right-handed alpha
Helix 11	AB2	A	304	315	Right-handed alpha
Helix 12	AB3	A	316	343	Right-handed alpha
Helix 13	AB4	A	353	369	Right-handed alpha
Helix 14	AB5	A	372	392	Right-handed alpha
Helix 15	AB6	A	393	398	Right-handed 310
Helix 16	AB7	A	406	410	Right-handed 310
Helix 17	AB8	A	417	441	Right-handed alpha
Helix 18	AB9	A	458	466	Right-handed alpha
Helix 19	AC1	A	467	483	Right-handed alpha
Helix 20	AC2	A	487	489	Right-handed 310
Helix 21	AC3	A	501	517	Right-handed alpha
Helix 22	AC4	A	531	548	Right-handed alpha
Helix 23	AC5	B	269	279	Right-handed alpha
Helix 24	AC6	B	301	316	Right-handed alpha
Helix 25	AC7	B	316	343	Right-handed alpha
Helix 26	AC8	B	353	370	Right-handed alpha
Helix 27	AC9	B	372	392	Right-handed alpha
Helix 28	AD1	B	393	395	Right-handed 310
Helix 29	AD2	B	417	441	Right-handed alpha
Helix 30	AD3	B	458	466	Right-handed alpha
Helix 31	AD4	B	472	483	Right-handed alpha
Helix 32	AD5	B	487	489	Right-handed 310
Helix 33	AD6	B	501	518	Right-handed alpha
Helix 34	AD7	B	531	546	Right-handed alpha
Helix 35	AD8	B	547	549	Right-handed 310
Helix 36	AD9	C	198	205	Right-handed alpha
Helix 37	AE1	C	269	279	Right-handed alpha
Helix 38	AE2	C	304	315	Right-handed alpha
Helix 39	AE3	C	316	343	Right-handed alpha
Helix 40	AE4	C	353	369	Right-handed alpha
Helix 41	AE5	C	372	392	Right-handed alpha
Helix 42	AE6	C	393	398	Right-handed 310
Helix 43	AE7	C	406	410	Right-handed 310
Helix 44	AE8	C	417	441	Right-handed alpha
Helix 45	AE9	C	458	466	Right-handed alpha
Helix 46	AF1	C	467	483	Right-handed alpha
Helix 47	AF2	C	487	489	Right-handed 310
Helix 48	AF3	C	501	517	Right-handed alpha
Helix 49	AF4	C	531	548	Right-handed alpha
Helix 50	AF5	D	269	279	Right-handed alpha
Helix 51	AF6	D	301	316	Right-handed alpha
Helix 52	AF7	D	316	343	Right-handed alpha
Helix 53	AF8	D	353	370	Right-handed alpha
Helix 54	AF9	D	372	392	Right-handed alpha
Helix 55	AG1	D	393	395	Right-handed 310
Helix 56	AG2	D	417	441	Right-handed alpha
Helix 57	AG3	D	458	466	Right-handed alpha
Helix 58	AG4	D	472	483	Right-handed alpha
Helix 59	AG5	D	487	489	Right-handed 310
Helix 60	AG6	D	501	518	Right-handed alpha
Helix 61	AG7	D	531	546	Right-handed alpha
Helix 62	AG8	D	547	549	Right-handed 310
Helix 63	AG9	E	13	26	Right-handed alpha
Helix 64	AH1	E	41	52	Right-handed alpha
Helix 65	AH2	E	74	76	Right-handed 310
Helix 66	AH3	F	13	26	Right-handed alpha
Helix 67	AH4	F	41	52	Right-handed alpha
Helix 68	AH5	F	74	76	Right-handed 310

There are 18 sheets in PDB entry 7MI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	82	86	parallel
Strand 3	A	73	77	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	88	92	anti-parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	137	142	parallel
Strand 5	A	147	152	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	257	263	parallel
Strand 3	A	283	286	parallel
Strand 4	A	292	297	anti-parallel
Strand 5	B	292	298	anti-parallel
Strand 6	B	283	286	anti-parallel
Strand 7	B	257	262	parallel
Strand 8	B	222	224	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	253	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	232	236	anti-parallel
Strand 4	A	267	268	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	493	first strand
Strand 2	A	498	500	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	528	530	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	239	243	anti-parallel
Strand 3	B	232	236	anti-parallel
Strand 4	B	267	268	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	493	first strand
Strand 2	B	498	500	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	B	529	530	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	226	first strand
Strand 2	C	257	263	parallel
Strand 3	C	283	286	parallel
Strand 4	C	292	297	anti-parallel
Strand 5	D	292	298	anti-parallel
Strand 6	D	283	286	anti-parallel
Strand 7	D	257	262	parallel
Strand 8	D	222	224	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	253	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	267	268	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	493	first strand
Strand 2	C	498	500	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	521	first strand
Strand 2	C	528	530	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	239	243	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	267	268	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	493	first strand
Strand 2	D	498	500	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	520	first strand
Strand 2	D	529	530	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	3	10	anti-parallel
Strand 4	E	62	69	anti-parallel
Strand 5	F	78	80	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	F	62	69	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	29	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MI5