Analysis of interatomic Contacts of Structural Units in PDB entry:
7MI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MI9 entry

There are 10 chains in PDB entry 7MI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 211	THR 558
B	GLY 221	THR 558
C	ARG 220	THR 558
D	ARG 220	THR 558
E	MET 1	VAL 95
F	MET 1	VAL 95
G	A 1	G 80
H	C 3	C 74
I	C 1	C 12
J	G 1	C 6

There are 63 helices in PDB entry 7MI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	278	Right-handed alpha
Helix 2	AA2	A	304	316	Right-handed alpha
Helix 3	AA3	A	316	343	Right-handed alpha
Helix 4	AA4	A	353	358	Right-handed alpha
Helix 5	AA5	A	358	368	Right-handed alpha
Helix 6	AA6	A	374	383	Right-handed alpha
Helix 7	AA7	A	385	390	Right-handed alpha
Helix 8	AA8	A	391	394	Right-handed 310
Helix 9	AA9	A	406	410	Right-handed 310
Helix 10	AB1	A	419	438	Right-handed alpha
Helix 11	AB2	A	465	467	Right-handed 310
Helix 12	AB3	A	468	473	Right-handed alpha
Helix 13	AB4	A	476	481	Right-handed alpha
Helix 14	AB5	A	482	484	Right-handed 310
Helix 15	AB6	A	487	491	Right-handed 310
Helix 16	AB7	A	501	517	Right-handed alpha
Helix 17	AB8	A	531	547	Right-handed alpha
Helix 18	AB9	B	253	257	Right-handed 310
Helix 19	AC1	B	272	277	Right-handed alpha
Helix 20	AC2	B	302	315	Right-handed alpha
Helix 21	AC3	B	316	336	Right-handed alpha
Helix 22	AC4	B	337	339	Right-handed 310
Helix 23	AC5	B	353	368	Right-handed alpha
Helix 24	AC6	B	374	386	Right-handed alpha
Helix 25	AC7	B	387	389	Right-handed 310
Helix 26	AC8	B	390	395	Right-handed 310
Helix 27	AC9	B	418	423	Right-handed alpha
Helix 28	AD1	B	424	437	Right-handed alpha
Helix 29	AD2	B	458	463	Right-handed alpha
Helix 30	AD3	B	465	469	Right-handed 310
Helix 31	AD4	B	478	483	Right-handed alpha
Helix 32	AD5	B	501	518	Right-handed alpha
Helix 33	AD6	B	531	546	Right-handed alpha
Helix 34	AD7	C	269	277	Right-handed alpha
Helix 35	AD8	C	303	315	Right-handed alpha
Helix 36	AD9	C	316	333	Right-handed alpha
Helix 37	AE1	C	335	340	Right-handed alpha
Helix 38	AE2	C	353	358	Right-handed alpha
Helix 39	AE3	C	360	366	Right-handed alpha
Helix 40	AE4	C	372	390	Right-handed alpha
Helix 41	AE5	C	391	394	Right-handed 310
Helix 42	AE6	C	417	441	Right-handed alpha
Helix 43	AE7	C	458	466	Right-handed alpha
Helix 44	AE8	C	467	472	Right-handed alpha
Helix 45	AE9	C	472	483	Right-handed alpha
Helix 46	AF1	C	504	518	Right-handed alpha
Helix 47	AF2	C	531	548	Right-handed alpha
Helix 48	AF3	D	255	257	Right-handed 310
Helix 49	AF4	D	269	279	Right-handed alpha
Helix 50	AF5	D	301	313	Right-handed alpha
Helix 51	AF6	D	316	342	Right-handed alpha
Helix 52	AF7	D	353	368	Right-handed alpha
Helix 53	AF8	D	375	392	Right-handed alpha
Helix 54	AF9	D	417	441	Right-handed alpha
Helix 55	AG1	D	458	463	Right-handed alpha
Helix 56	AG2	D	467	472	Right-handed alpha
Helix 57	AG3	D	472	483	Right-handed alpha
Helix 58	AG4	D	501	518	Right-handed alpha
Helix 59	AG5	D	536	547	Right-handed alpha
Helix 60	AG6	E	13	26	Right-handed alpha
Helix 61	AG7	E	41	52	Right-handed alpha
Helix 62	AG8	F	13	26	Right-handed alpha
Helix 63	AG9	F	41	52	Right-handed alpha

There are 15 sheets in PDB entry 7MI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	257	263	parallel
Strand 3	A	283	286	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	253	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	232	236	anti-parallel
Strand 4	A	267	268	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	B	297	298	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	528	530	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	260	262	parallel
Strand 3	B	283	286	parallel
Strand 4	B	292	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	242	244	anti-parallel
Strand 3	B	232	233	anti-parallel
Strand 4	B	267	268	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	499	500	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	B	529	530	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	260	262	parallel
Strand 3	D	283	285	parallel
Strand 4	D	294	296	anti-parallel
Strand 5	C	294	297	anti-parallel
Strand 6	C	283	285	anti-parallel
Strand 7	C	257	262	parallel
Strand 8	C	222	226	parallel
Strand 9	F	93	94	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	239	243	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	267	268	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	493	first strand
Strand 2	C	498	500	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	521	first strand
Strand 2	C	528	530	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	236	first strand
Strand 2	D	239	244	anti-parallel
Strand 3	D	251	253	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	3	8	anti-parallel
Strand 4	E	64	67	anti-parallel
Strand 5	F	78	80	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	F	64	67	anti-parallel
Strand 3	F	3	8	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	30	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MI9