Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MIB entry

There are 10 chains in PDB entry 7MIB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	G 1	T 31
A	PRO 211	THR 558
B	GLY 221	THR 558
C	ASP 5	THR 558
D	GLY 219	THR 558
E	MET 1	VAL 95
F	MET 1	VAL 95
H	C 3	A 66
I	C 1	C 12
J	C 36	G 80

There are 70 helices in PDB entry 7MIB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	279	Right-handed alpha
Helix 2	AA2	A	303	316	Right-handed alpha
Helix 3	AA3	A	317	343	Right-handed alpha
Helix 4	AA4	A	353	369	Right-handed alpha
Helix 5	AA5	A	374	392	Right-handed alpha
Helix 6	AA6	A	422	439	Right-handed alpha
Helix 7	AA7	A	458	464	Right-handed alpha
Helix 8	AA8	A	468	473	Right-handed alpha
Helix 9	AA9	A	476	481	Right-handed alpha
Helix 10	AB1	A	487	489	Right-handed 310
Helix 11	AB2	A	501	516	Right-handed alpha
Helix 12	AB3	A	531	547	Right-handed alpha
Helix 13	AB4	B	253	257	Right-handed 310
Helix 14	AB5	B	271	277	Right-handed alpha
Helix 15	AB6	B	302	315	Right-handed alpha
Helix 16	AB7	B	316	339	Right-handed alpha
Helix 17	AB8	B	353	369	Right-handed alpha
Helix 18	AB9	B	372	386	Right-handed alpha
Helix 19	AC1	B	387	390	Right-handed 310
Helix 20	AC2	B	391	396	Right-handed alpha
Helix 21	AC3	B	418	422	Right-handed 310
Helix 22	AC4	B	424	440	Right-handed alpha
Helix 23	AC5	B	458	465	Right-handed alpha
Helix 24	AC6	B	467	472	Right-handed alpha
Helix 25	AC7	B	472	482	Right-handed alpha
Helix 26	AC8	B	487	491	Right-handed 310
Helix 27	AC9	B	501	517	Right-handed alpha
Helix 28	AD1	B	531	546	Right-handed alpha
Helix 29	AD2	C	13	18	Right-handed alpha
Helix 30	AD3	C	19	21	Right-handed 310
Helix 31	AD4	C	22	32	Right-handed alpha
Helix 32	AD5	C	38	52	Right-handed alpha
Helix 33	AD6	C	109	113	Right-handed 310
Helix 34	AD7	C	114	131	Right-handed alpha
Helix 35	AD8	C	154	175	Right-handed alpha
Helix 36	AD9	C	185	191	Right-handed alpha
Helix 37	AE1	C	192	197	Right-handed alpha
Helix 38	AE2	C	197	205	Right-handed alpha
Helix 39	AE3	C	269	279	Right-handed alpha
Helix 40	AE4	C	304	315	Right-handed alpha
Helix 41	AE5	C	316	342	Right-handed alpha
Helix 42	AE6	C	353	360	Right-handed alpha
Helix 43	AE7	C	361	369	Right-handed alpha
Helix 44	AE8	C	372	390	Right-handed alpha
Helix 45	AE9	C	391	395	Right-handed 310
Helix 46	AF1	C	417	441	Right-handed alpha
Helix 47	AF2	C	464	472	Right-handed alpha
Helix 48	AF3	C	472	483	Right-handed alpha
Helix 49	AF4	C	487	489	Right-handed 310
Helix 50	AF5	C	501	516	Right-handed alpha
Helix 51	AF6	C	530	548	Right-handed alpha
Helix 52	AF7	D	269	279	Right-handed alpha
Helix 53	AF8	D	303	315	Right-handed alpha
Helix 54	AF9	D	316	340	Right-handed alpha
Helix 55	AG1	D	353	369	Right-handed alpha
Helix 56	AG2	D	372	390	Right-handed alpha
Helix 57	AG3	D	391	395	Right-handed 310
Helix 58	AG4	D	417	441	Right-handed alpha
Helix 59	AG5	D	458	466	Right-handed alpha
Helix 60	AG6	D	467	473	Right-handed alpha
Helix 61	AG7	D	473	483	Right-handed alpha
Helix 62	AG8	D	487	489	Right-handed 310
Helix 63	AG9	D	501	517	Right-handed alpha
Helix 64	AH1	D	531	546	Right-handed alpha
Helix 65	AH2	E	13	26	Right-handed alpha
Helix 66	AH3	E	44	55	Right-handed alpha
Helix 67	AH4	E	74	78	Right-handed 310
Helix 68	AH5	F	13	26	Right-handed alpha
Helix 69	AH6	F	44	55	Right-handed alpha
Helix 70	AH7	F	74	78	Right-handed 310

There are 22 sheets in PDB entry 7MIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	257	263	parallel
Strand 3	A	283	286	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	236	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	247	253	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	B	297	298	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	499	500	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	529	530	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	242	244	anti-parallel
Strand 3	B	232	233	anti-parallel
Strand 4	B	267	268	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	262	first strand
Strand 2	B	283	285	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	521	first strand
Strand 2	B	528	530	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	82	89	parallel
Strand 3	C	71	77	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	82	89	parallel
Strand 3	C	98	102	anti-parallel
Strand 4	C	138	142	parallel
Strand 5	C	148	151	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	91	92	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	224	first strand
Strand 2	C	257	263	parallel
Strand 3	C	283	286	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	231	236	anti-parallel
Strand 4	C	267	268	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	D	292	298	anti-parallel
Strand 3	D	283	286	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	493	first strand
Strand 2	C	498	500	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	521	first strand
Strand 2	C	528	529	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	260	262	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	239	243	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	267	268	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	493	first strand
Strand 2	D	498	500	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	520	first strand
Strand 2	D	529	530	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	4	10	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	4	10	anti-parallel
Strand 4	F	62	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MIB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIB