Analysis of interatomic Contacts of Structural Units in PDB entry:
7MID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MID entry

There are 6 chains in PDB entry 7MID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	THR 558
B	GLY 219	THR 558
C	MET 1	VAL 95
D	MET 1	GLN 91
E	C 1	G 24
F	C 3	T 35

There are 40 helices in PDB entry 7MID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	22	32	Right-handed alpha
Helix 3	AA3	A	38	53	Right-handed alpha
Helix 4	AA4	A	114	131	Right-handed alpha
Helix 5	AA5	A	154	175	Right-handed alpha
Helix 6	AA6	A	186	190	Right-handed 310
Helix 7	AA7	A	192	197	Right-handed alpha
Helix 8	AA8	A	197	205	Right-handed alpha
Helix 9	AA9	A	253	255	Right-handed 310
Helix 10	AB1	A	269	279	Right-handed alpha
Helix 11	AB2	A	304	315	Right-handed alpha
Helix 12	AB3	A	316	342	Right-handed alpha
Helix 13	AB4	A	353	369	Right-handed alpha
Helix 14	AB5	A	372	390	Right-handed alpha
Helix 15	AB6	A	391	395	Right-handed 310
Helix 16	AB7	A	406	410	Right-handed 310
Helix 17	AB8	A	417	440	Right-handed alpha
Helix 18	AB9	A	460	465	Right-handed alpha
Helix 19	AC1	A	467	483	Right-handed alpha
Helix 20	AC2	A	487	489	Right-handed 310
Helix 21	AC3	A	501	517	Right-handed alpha
Helix 22	AC4	A	531	547	Right-handed alpha
Helix 23	AC5	B	269	279	Right-handed alpha
Helix 24	AC6	B	300	315	Right-handed alpha
Helix 25	AC7	B	316	343	Right-handed alpha
Helix 26	AC8	B	353	369	Right-handed alpha
Helix 27	AC9	B	372	390	Right-handed alpha
Helix 28	AD1	B	391	395	Right-handed 310
Helix 29	AD2	B	417	441	Right-handed alpha
Helix 30	AD3	B	460	473	Right-handed alpha
Helix 31	AD4	B	473	483	Right-handed alpha
Helix 32	AD5	B	487	489	Right-handed 310
Helix 33	AD6	B	501	517	Right-handed alpha
Helix 34	AD7	B	531	546	Right-handed alpha
Helix 35	AD8	C	13	28	Right-handed alpha
Helix 36	AD9	C	41	52	Right-handed alpha
Helix 37	AE1	C	74	76	Right-handed 310
Helix 38	AE2	D	13	28	Right-handed alpha
Helix 39	AE3	D	41	52	Right-handed alpha
Helix 40	AE4	D	74	76	Right-handed 310

There are 11 sheets in PDB entry 7MID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	82	92	parallel
Strand 3	A	67	77	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	82	92	parallel
Strand 3	A	98	102	anti-parallel
Strand 4	A	138	142	parallel
Strand 5	A	149	151	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	257	263	parallel
Strand 3	A	283	286	parallel
Strand 4	A	292	295	anti-parallel
Strand 5	B	292	298	anti-parallel
Strand 6	B	283	286	anti-parallel
Strand 7	B	257	262	parallel
Strand 8	B	222	226	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	231	236	anti-parallel
Strand 4	A	267	268	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	493	first strand
Strand 2	A	498	500	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	528	530	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	239	243	anti-parallel
Strand 3	B	232	236	anti-parallel
Strand 4	B	267	268	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	493	first strand
Strand 2	B	498	500	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	B	529	530	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	3	10	anti-parallel
Strand 4	C	62	69	anti-parallel
Strand 5	D	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	D	62	69	anti-parallel
Strand 3	D	3	10	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	29	32	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MID

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MID