Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MIF entry

There are 4 chains in PDB entry 7MIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLN 556
G	MET 1	GLN 556
H	MET 1	GLN 556
I	MET 1	GLN 556

There are 96 helices in PDB entry 7MIF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	15	30	Right-handed alpha
Helix 2	AA2	C	68	78	Right-handed alpha
Helix 3	AA3	C	83	85	Right-handed 310
Helix 4	AA4	C	90	103	Right-handed alpha
Helix 5	AA5	C	112	131	Right-handed alpha
Helix 6	AA6	C	156	170	Right-handed alpha
Helix 7	AA7	C	171	173	Right-handed 310
Helix 8	AA8	C	194	207	Right-handed alpha
Helix 9	AA9	C	223	234	Right-handed alpha
Helix 10	AB1	C	237	239	Right-handed 310
Helix 11	AB2	C	249	251	Right-handed 310
Helix 12	AB3	C	252	260	Right-handed alpha
Helix 13	AB4	C	261	270	Right-handed alpha
Helix 14	AB5	C	283	293	Right-handed alpha
Helix 15	AB6	C	314	329	Right-handed alpha
Helix 16	AB7	C	345	350	Right-handed alpha
Helix 17	AB8	C	350	364	Right-handed alpha
Helix 18	AB9	C	377	391	Right-handed alpha
Helix 19	AC1	C	399	413	Right-handed alpha
Helix 20	AC2	C	462	468	Right-handed alpha
Helix 21	AC3	C	487	491	Right-handed 310
Helix 22	AC4	C	526	531	Right-handed 310
Helix 23	AC5	C	537	548	Right-handed alpha
Helix 24	AC6	C	550	555	Right-handed alpha
Helix 25	AC7	G	15	30	Right-handed alpha
Helix 26	AC8	G	68	78	Right-handed alpha
Helix 27	AC9	G	83	85	Right-handed 310
Helix 28	AD1	G	90	103	Right-handed alpha
Helix 29	AD2	G	112	131	Right-handed alpha
Helix 30	AD3	G	156	170	Right-handed alpha
Helix 31	AD4	G	171	173	Right-handed 310
Helix 32	AD5	G	194	207	Right-handed alpha
Helix 33	AD6	G	223	234	Right-handed alpha
Helix 34	AD7	G	237	239	Right-handed 310
Helix 35	AD8	G	249	251	Right-handed 310
Helix 36	AD9	G	252	260	Right-handed alpha
Helix 37	AE1	G	261	270	Right-handed alpha
Helix 38	AE2	G	283	293	Right-handed alpha
Helix 39	AE3	G	314	329	Right-handed alpha
Helix 40	AE4	G	345	350	Right-handed alpha
Helix 41	AE5	G	350	364	Right-handed alpha
Helix 42	AE6	G	377	391	Right-handed alpha
Helix 43	AE7	G	399	413	Right-handed alpha
Helix 44	AE8	G	462	468	Right-handed alpha
Helix 45	AE9	G	487	491	Right-handed 310
Helix 46	AF1	G	526	531	Right-handed 310
Helix 47	AF2	G	537	548	Right-handed alpha
Helix 48	AF3	G	550	555	Right-handed alpha
Helix 49	AF4	H	15	30	Right-handed alpha
Helix 50	AF5	H	68	78	Right-handed alpha
Helix 51	AF6	H	83	85	Right-handed 310
Helix 52	AF7	H	90	103	Right-handed alpha
Helix 53	AF8	H	112	131	Right-handed alpha
Helix 54	AF9	H	156	170	Right-handed alpha
Helix 55	AG1	H	171	173	Right-handed 310
Helix 56	AG2	H	194	207	Right-handed alpha
Helix 57	AG3	H	223	234	Right-handed alpha
Helix 58	AG4	H	237	239	Right-handed 310
Helix 59	AG5	H	249	251	Right-handed 310
Helix 60	AG6	H	252	260	Right-handed alpha
Helix 61	AG7	H	261	270	Right-handed alpha
Helix 62	AG8	H	283	293	Right-handed alpha
Helix 63	AG9	H	314	329	Right-handed alpha
Helix 64	AH1	H	345	350	Right-handed alpha
Helix 65	AH2	H	350	364	Right-handed alpha
Helix 66	AH3	H	377	391	Right-handed alpha
Helix 67	AH4	H	399	413	Right-handed alpha
Helix 68	AH5	H	462	468	Right-handed alpha
Helix 69	AH6	H	487	491	Right-handed 310
Helix 70	AH7	H	526	531	Right-handed 310
Helix 71	AH8	H	537	548	Right-handed alpha
Helix 72	AH9	H	550	555	Right-handed alpha
Helix 73	AI1	I	15	30	Right-handed alpha
Helix 74	AI2	I	68	78	Right-handed alpha
Helix 75	AI3	I	83	85	Right-handed 310
Helix 76	AI4	I	90	103	Right-handed alpha
Helix 77	AI5	I	112	131	Right-handed alpha
Helix 78	AI6	I	156	170	Right-handed alpha
Helix 79	AI7	I	171	173	Right-handed 310
Helix 80	AI8	I	194	207	Right-handed alpha
Helix 81	AI9	I	223	234	Right-handed alpha
Helix 82	AJ1	I	237	239	Right-handed 310
Helix 83	AJ2	I	249	251	Right-handed 310
Helix 84	AJ3	I	252	260	Right-handed alpha
Helix 85	AJ4	I	261	270	Right-handed alpha
Helix 86	AJ5	I	283	293	Right-handed alpha
Helix 87	AJ6	I	314	329	Right-handed alpha
Helix 88	AJ7	I	345	350	Right-handed alpha
Helix 89	AJ8	I	350	364	Right-handed alpha
Helix 90	AJ9	I	377	391	Right-handed alpha
Helix 91	AK1	I	399	413	Right-handed alpha
Helix 92	AK2	I	462	468	Right-handed alpha
Helix 93	AK3	I	487	491	Right-handed 310
Helix 94	AK4	I	526	531	Right-handed 310
Helix 95	AK5	I	537	548	Right-handed alpha
Helix 96	AK6	I	550	555	Right-handed alpha

There are 16 sheets in PDB entry 7MIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	34	40	parallel
Strand 3	C	142	147	parallel
Strand 4	C	3	8	parallel
Strand 5	C	175	182	parallel
Strand 6	C	213	217	parallel
Strand 7	C	241	244	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	67	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	338	first strand
Strand 2	C	298	305	parallel
Strand 3	C	366	369	parallel
Strand 4	C	395	398	parallel
Strand 5	C	520	523	parallel
Strand 6	C	509	513	anti-parallel
Strand 7	C	498	503	anti-parallel
Strand 8	C	449	457	anti-parallel
Strand 9	C	473	480	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	C	431	435	parallel
Strand 3	C	482	484	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	89	first strand
Strand 2	G	34	40	parallel
Strand 3	G	142	147	parallel
Strand 4	G	3	8	parallel
Strand 5	G	175	182	parallel
Strand 6	G	213	217	parallel
Strand 7	G	241	244	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	66	67	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	331	338	first strand
Strand 2	G	298	305	parallel
Strand 3	G	366	369	parallel
Strand 4	G	395	398	parallel
Strand 5	G	520	523	parallel
Strand 6	G	509	513	anti-parallel
Strand 7	G	498	503	anti-parallel
Strand 8	G	449	457	anti-parallel
Strand 9	G	473	480	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	420	421	first strand
Strand 2	G	431	435	parallel
Strand 3	G	482	484	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	89	first strand
Strand 2	H	34	40	parallel
Strand 3	H	142	147	parallel
Strand 4	H	3	8	parallel
Strand 5	H	175	182	parallel
Strand 6	H	213	217	parallel
Strand 7	H	241	244	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	66	67	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	331	338	first strand
Strand 2	H	298	305	parallel
Strand 3	H	366	369	parallel
Strand 4	H	395	398	parallel
Strand 5	H	520	523	parallel
Strand 6	H	509	513	anti-parallel
Strand 7	H	498	503	anti-parallel
Strand 8	H	449	457	anti-parallel
Strand 9	H	473	480	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	420	421	first strand
Strand 2	H	431	435	parallel
Strand 3	H	482	484	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	87	89	first strand
Strand 2	I	34	40	parallel
Strand 3	I	142	147	parallel
Strand 4	I	3	8	parallel
Strand 5	I	175	182	parallel
Strand 6	I	213	217	parallel
Strand 7	I	241	244	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	67	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	331	338	first strand
Strand 2	I	298	305	parallel
Strand 3	I	366	369	parallel
Strand 4	I	395	398	parallel
Strand 5	I	520	523	parallel
Strand 6	I	509	513	anti-parallel
Strand 7	I	498	503	anti-parallel
Strand 8	I	449	457	anti-parallel
Strand 9	I	473	480	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	420	421	first strand
Strand 2	I	431	435	parallel
Strand 3	I	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIF