Analysis of interatomic Contacts of Structural Units in PDB entry:
7MII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MII entry

There are 4 chains in PDB entry 7MII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 556
B	MET 1	GLN 556
C	MET 1	GLN 556
E	MET 1	GLN 556

There are104 helices in PDB entry 7MII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	14	Right-handed 310
Helix 2	AA2	A	15	30	Right-handed alpha
Helix 3	AA3	A	46	50	Right-handed 310
Helix 4	AA4	A	69	79	Right-handed alpha
Helix 5	AA5	A	83	85	Right-handed 310
Helix 6	AA6	A	90	103	Right-handed alpha
Helix 7	AA7	A	112	130	Right-handed alpha
Helix 8	AA8	A	153	155	Right-handed 310
Helix 9	AA9	A	156	169	Right-handed alpha
Helix 10	AB1	A	171	173	Right-handed 310
Helix 11	AB2	A	194	207	Right-handed alpha
Helix 12	AB3	A	223	234	Right-handed alpha
Helix 13	AB4	A	237	239	Right-handed 310
Helix 14	AB5	A	251	259	Right-handed alpha
Helix 15	AB6	A	261	271	Right-handed alpha
Helix 16	AB7	A	283	293	Right-handed alpha
Helix 17	AB8	A	314	328	Right-handed alpha
Helix 18	AB9	A	338	343	Right-handed alpha
Helix 19	AC1	A	352	363	Right-handed alpha
Helix 20	AC2	A	380	392	Right-handed alpha
Helix 21	AC3	A	399	411	Right-handed alpha
Helix 22	AC4	A	462	468	Right-handed alpha
Helix 23	AC5	A	488	492	Right-handed 310
Helix 24	AC6	A	526	531	Right-handed 310
Helix 25	AC7	A	537	548	Right-handed alpha
Helix 26	AC8	A	550	555	Right-handed alpha
Helix 27	AC9	B	11	14	Right-handed 310
Helix 28	AD1	B	15	30	Right-handed alpha
Helix 29	AD2	B	46	50	Right-handed 310
Helix 30	AD3	B	69	79	Right-handed alpha
Helix 31	AD4	B	83	85	Right-handed 310
Helix 32	AD5	B	90	103	Right-handed alpha
Helix 33	AD6	B	112	130	Right-handed alpha
Helix 34	AD7	B	153	155	Right-handed 310
Helix 35	AD8	B	156	169	Right-handed alpha
Helix 36	AD9	B	171	173	Right-handed 310
Helix 37	AE1	B	194	207	Right-handed alpha
Helix 38	AE2	B	223	234	Right-handed alpha
Helix 39	AE3	B	237	239	Right-handed 310
Helix 40	AE4	B	251	259	Right-handed alpha
Helix 41	AE5	B	261	271	Right-handed alpha
Helix 42	AE6	B	283	293	Right-handed alpha
Helix 43	AE7	B	314	328	Right-handed alpha
Helix 44	AE8	B	338	343	Right-handed alpha
Helix 45	AE9	B	352	363	Right-handed alpha
Helix 46	AF1	B	380	392	Right-handed alpha
Helix 47	AF2	B	399	411	Right-handed alpha
Helix 48	AF3	B	462	468	Right-handed alpha
Helix 49	AF4	B	488	492	Right-handed 310
Helix 50	AF5	B	526	531	Right-handed 310
Helix 51	AF6	B	537	548	Right-handed alpha
Helix 52	AF7	B	550	555	Right-handed alpha
Helix 53	AF8	C	11	14	Right-handed 310
Helix 54	AF9	C	15	30	Right-handed alpha
Helix 55	AG1	C	46	50	Right-handed 310
Helix 56	AG2	C	69	79	Right-handed alpha
Helix 57	AG3	C	83	85	Right-handed 310
Helix 58	AG4	C	90	103	Right-handed alpha
Helix 59	AG5	C	112	130	Right-handed alpha
Helix 60	AG6	C	153	155	Right-handed 310
Helix 61	AG7	C	156	169	Right-handed alpha
Helix 62	AG8	C	171	173	Right-handed 310
Helix 63	AG9	C	194	207	Right-handed alpha
Helix 64	AH1	C	223	234	Right-handed alpha
Helix 65	AH2	C	237	239	Right-handed 310
Helix 66	AH3	C	251	259	Right-handed alpha
Helix 67	AH4	C	261	271	Right-handed alpha
Helix 68	AH5	C	283	293	Right-handed alpha
Helix 69	AH6	C	314	328	Right-handed alpha
Helix 70	AH7	C	338	343	Right-handed alpha
Helix 71	AH8	C	352	363	Right-handed alpha
Helix 72	AH9	C	380	392	Right-handed alpha
Helix 73	AI1	C	399	411	Right-handed alpha
Helix 74	AI2	C	462	468	Right-handed alpha
Helix 75	AI3	C	488	492	Right-handed 310
Helix 76	AI4	C	526	531	Right-handed 310
Helix 77	AI5	C	537	548	Right-handed alpha
Helix 78	AI6	C	550	555	Right-handed alpha
Helix 79	AI7	E	11	14	Right-handed 310
Helix 80	AI8	E	15	30	Right-handed alpha
Helix 81	AI9	E	46	50	Right-handed 310
Helix 82	AJ1	E	69	79	Right-handed alpha
Helix 83	AJ2	E	83	85	Right-handed 310
Helix 84	AJ3	E	90	103	Right-handed alpha
Helix 85	AJ4	E	112	130	Right-handed alpha
Helix 86	AJ5	E	153	155	Right-handed 310
Helix 87	AJ6	E	156	169	Right-handed alpha
Helix 88	AJ7	E	171	173	Right-handed 310
Helix 89	AJ8	E	194	207	Right-handed alpha
Helix 90	AJ9	E	223	234	Right-handed alpha
Helix 91	AK1	E	237	239	Right-handed 310
Helix 92	AK2	E	251	259	Right-handed alpha
Helix 93	AK3	E	261	271	Right-handed alpha
Helix 94	AK4	E	283	293	Right-handed alpha
Helix 95	AK5	E	314	328	Right-handed alpha
Helix 96	AK6	E	338	343	Right-handed alpha
Helix 97	AK7	E	352	363	Right-handed alpha
Helix 98	AK8	E	380	392	Right-handed alpha
Helix 99	AK9	E	399	411	Right-handed alpha
Helix 100	AL1	E	462	468	Right-handed alpha
Helix 101	AL2	E	488	492	Right-handed 310
Helix 102	AL3	E	526	531	Right-handed 310
Helix 103	AL4	E	537	548	Right-handed alpha
Helix 104	AL5	E	550	555	Right-handed alpha

There are 12 sheets in PDB entry 7MII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	34	40	parallel
Strand 3	A	142	147	parallel
Strand 4	A	2	9	parallel
Strand 5	A	175	182	parallel
Strand 6	A	213	218	parallel
Strand 7	A	241	245	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	66	68	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	336	first strand
Strand 2	A	297	303	parallel
Strand 3	A	366	369	parallel
Strand 4	A	395	398	parallel
Strand 5	A	520	523	parallel
Strand 6	A	509	514	anti-parallel
Strand 7	A	497	503	anti-parallel
Strand 8	A	449	457	anti-parallel
Strand 9	A	473	480	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	34	40	parallel
Strand 3	B	142	147	parallel
Strand 4	B	2	9	parallel
Strand 5	B	175	182	parallel
Strand 6	B	213	218	parallel
Strand 7	B	241	245	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	66	68	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	336	first strand
Strand 2	B	297	303	parallel
Strand 3	B	366	369	parallel
Strand 4	B	395	398	parallel
Strand 5	B	520	523	parallel
Strand 6	B	509	514	anti-parallel
Strand 7	B	497	503	anti-parallel
Strand 8	B	449	457	anti-parallel
Strand 9	B	473	480	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	34	40	parallel
Strand 3	C	142	147	parallel
Strand 4	C	2	9	parallel
Strand 5	C	175	182	parallel
Strand 6	C	213	218	parallel
Strand 7	C	241	245	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	66	68	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	336	first strand
Strand 2	C	297	303	parallel
Strand 3	C	366	369	parallel
Strand 4	C	395	398	parallel
Strand 5	C	520	523	parallel
Strand 6	C	509	514	anti-parallel
Strand 7	C	497	503	anti-parallel
Strand 8	C	449	457	anti-parallel
Strand 9	C	473	480	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	34	40	parallel
Strand 3	E	142	147	parallel
Strand 4	E	2	9	parallel
Strand 5	E	175	182	parallel
Strand 6	E	213	218	parallel
Strand 7	E	241	245	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	66	68	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	336	first strand
Strand 2	E	297	303	parallel
Strand 3	E	366	369	parallel
Strand 4	E	395	398	parallel
Strand 5	E	520	523	parallel
Strand 6	E	509	514	anti-parallel
Strand 7	E	497	503	anti-parallel
Strand 8	E	449	457	anti-parallel
Strand 9	E	473	480	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MII

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MII