Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MIQ entry

There are 2 chains in PDB entry 7MIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 212
B
 MET 1GLN 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 7MIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
87 105Right-handed alpha
Helix 5
AA5
A
105 115Right-handed alpha
Helix 6
AA6
A
126 152Right-handed alpha
Helix 7
AA7
A
161 177Right-handed alpha
Helix 8
AA8
A
181 186Right-handed alpha
Helix 9
AA9
A
186 197Right-handed alpha
Helix 10
AB1
A
198 203Right-handed 310
Helix 11
AB2
A
206 211Right-handed alpha
Helix 12
AB3
B
9 23Right-handed alpha
Helix 13
AB4
B
43 47Right-handed 310
Helix 14
AB5
B
65 77Right-handed alpha
Helix 15
AB6
B
87 105Right-handed alpha
Helix 16
AB7
B
105 115Right-handed alpha
Helix 17
AB8
B
129 152Right-handed alpha
Helix 18
AB9
B
161 177Right-handed alpha
Helix 19
AC1
B
181 186Right-handed alpha
Helix 20
AC2
B
186 197Right-handed alpha
Helix 21
AC3
B
198 203Right-handed 310
Helix 22
AC4
B
206 211Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7MIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
54 56anti-parallel
Strand 4
A
62 64anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
2 5parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
62 63anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il