Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MIY entry

There are 3 chains in PDB entry 7MIY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 86	LEU 1837
C	GLU 38	HIS 361
D	PHE 27	GLY 1076

There are113 helices in PDB entry 7MIY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	A	94	114	Right-handed alpha
Helix 3	AA3	A	118	122	Right-handed 310
Helix 4	AA4	A	124	132	Right-handed alpha
Helix 5	AA5	A	133	153	Right-handed alpha
Helix 6	AA6	A	160	163	Right-handed 310
Helix 7	AA7	A	164	182	Right-handed alpha
Helix 8	AA8	A	188	193	Right-handed alpha
Helix 9	AA9	A	194	199	Right-handed 310
Helix 10	AB1	A	200	206	Right-handed alpha
Helix 11	AB2	A	206	218	Right-handed alpha
Helix 12	AB3	A	220	245	Right-handed alpha
Helix 13	AB4	A	299	312	Right-handed alpha
Helix 14	AB5	A	315	328	Right-handed alpha
Helix 15	AB6	A	332	364	Right-handed alpha
Helix 16	AB7	A	365	397	Right-handed alpha
Helix 17	AB8	A	466	479	Right-handed alpha
Helix 18	AB9	A	481	500	Right-handed alpha
Helix 19	AC1	A	507	529	Right-handed alpha
Helix 20	AC2	A	530	535	Right-handed alpha
Helix 21	AC3	A	537	542	Right-handed alpha
Helix 22	AC4	A	544	564	Right-handed alpha
Helix 23	AC5	A	573	589	Right-handed 310
Helix 24	AC6	A	591	605	Right-handed alpha
Helix 25	AC7	A	605	632	Right-handed alpha
Helix 26	AC8	A	648	662	Right-handed alpha
Helix 27	AC9	A	664	676	Right-handed alpha
Helix 28	AD1	A	682	684	Right-handed 310
Helix 29	AD2	A	685	698	Right-handed alpha
Helix 30	AD3	A	699	741	Right-handed alpha
Helix 31	AD4	A	747	755	Right-handed alpha
Helix 32	AD5	A	758	763	Right-handed 310
Helix 33	AD6	A	766	786	Right-handed alpha
Helix 34	AD7	A	1139	1144	Right-handed 310
Helix 35	AD8	A	1152	1169	Right-handed alpha
Helix 36	AD9	A	1177	1203	Right-handed alpha
Helix 37	AE1	A	1219	1238	Right-handed alpha
Helix 38	AE2	A	1243	1253	Right-handed alpha
Helix 39	AE3	A	1254	1259	Right-handed 310
Helix 40	AE4	A	1260	1265	Right-handed alpha
Helix 41	AE5	A	1265	1281	Right-handed alpha
Helix 42	AE6	A	1282	1305	Right-handed alpha
Helix 43	AE7	A	1350	1364	Right-handed alpha
Helix 44	AE8	A	1366	1377	Right-handed alpha
Helix 45	AE9	A	1392	1403	Right-handed alpha
Helix 46	AF1	A	1405	1417	Right-handed alpha
Helix 47	AF2	A	1435	1446	Right-handed alpha
Helix 48	AF3	A	1460	1470	Right-handed alpha
Helix 49	AF4	A	1470	1487	Right-handed alpha
Helix 50	AF5	A	1496	1526	Right-handed alpha
Helix 51	AF6	A	1526	1531	Right-handed alpha
Helix 52	AF7	A	1533	1555	Right-handed alpha
Helix 53	AF8	A	1567	1573	Right-handed alpha
Helix 54	AF9	A	1573	1578	Right-handed alpha
Helix 55	AG1	A	1585	1597	Right-handed alpha
Helix 56	AG2	A	1599	1622	Right-handed alpha
Helix 57	AG3	A	1640	1654	Right-handed alpha
Helix 58	AG4	A	1656	1663	Right-handed alpha
Helix 59	AG5	A	1683	1710	Right-handed alpha
Helix 60	AG6	A	1710	1715	Right-handed alpha
Helix 61	AG7	A	1724	1737	Right-handed alpha
Helix 62	AG8	A	1746	1756	Right-handed alpha
Helix 63	AG9	A	1766	1776	Right-handed alpha
Helix 64	AH1	A	1780	1784	Right-handed 310
Helix 65	AH2	A	1790	1803	Right-handed alpha
Helix 66	AH3	A	1806	1811	Right-handed alpha
Helix 67	AH4	A	1813	1825	Right-handed alpha
Helix 68	AH5	A	1832	1837	Right-handed alpha
Helix 69	AH6	C	39	55	Right-handed alpha
Helix 70	AH7	C	120	132	Right-handed alpha
Helix 71	AH8	C	155	159	Right-handed 310
Helix 72	AH9	C	190	208	Right-handed alpha
Helix 73	AI1	C	246	253	Right-handed alpha
Helix 74	AI2	C	253	262	Right-handed alpha
Helix 75	AI3	C	276	281	Right-handed 310
Helix 76	AI4	C	296	306	Right-handed alpha
Helix 77	AI5	C	308	313	Right-handed alpha
Helix 78	AI6	C	316	327	Right-handed alpha
Helix 79	AI7	C	329	333	Right-handed 310
Helix 80	AI8	C	341	360	Right-handed alpha
Helix 81	AI9	D	29	53	Right-handed alpha
Helix 82	AJ1	D	54	65	Right-handed alpha
Helix 83	AJ2	D	74	110	Right-handed alpha
Helix 84	AJ3	D	176	186	Right-handed alpha
Helix 85	AJ4	D	188	200	Right-handed alpha
Helix 86	AJ5	D	237	240	Right-handed 310
Helix 87	AJ6	D	241	249	Right-handed alpha
Helix 88	AJ7	D	261	265	Right-handed 310
Helix 89	AJ8	D	266	281	Right-handed alpha
Helix 90	AJ9	D	311	323	Right-handed alpha
Helix 91	AK1	D	332	344	Right-handed alpha
Helix 92	AK2	D	369	377	Right-handed alpha
Helix 93	AK3	D	396	406	Right-handed alpha
Helix 94	AK4	D	415	417	Right-handed 310
Helix 95	AK5	D	418	423	Right-handed alpha
Helix 96	AK6	D	425	431	Right-handed alpha
Helix 97	AK7	D	431	438	Right-handed alpha
Helix 98	AK8	D	439	442	Right-handed 310
Helix 99	AK9	D	494	501	Right-handed alpha
Helix 100	AL1	D	560	565	Right-handed alpha
Helix 101	AL2	D	568	581	Right-handed alpha
Helix 102	AL3	D	637	648	Right-handed alpha
Helix 103	AL4	D	649	651	Right-handed 310
Helix 104	AL5	D	652	657	Right-handed alpha
Helix 105	AL6	D	676	688	Right-handed alpha
Helix 106	AL7	D	700	717	Right-handed alpha
Helix 107	AL8	D	719	723	Right-handed 310
Helix 108	AL9	D	745	750	Right-handed alpha
Helix 109	AM1	D	757	760	Right-handed 310
Helix 110	AM2	D	761	770	Right-handed alpha
Helix 111	AM3	D	817	827	Right-handed alpha
Helix 112	AM4	D	874	878	Right-handed 310
Helix 113	AM5	D	879	889	Right-handed alpha

There are 18 sheets in PDB entry 7MIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	282	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1309	1311	first strand
Strand 2	A	1341	1343	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1325	1328	first strand
Strand 2	A	1335	1338	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1668	1669	first strand
Strand 2	A	1678	1679	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	92	95	anti-parallel
Strand 4	C	62	66	anti-parallel
Strand 5	C	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	266	269	parallel
Strand 3	C	180	183	parallel
Strand 4	C	288	292	parallel
Strand 5	C	335	337	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	629	633	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	142	143	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	165	167	parallel
Strand 3	D	215	218	anti-parallel
Strand 4	D	206	210	anti-parallel
Strand 5	D	484	493	anti-parallel
Strand 6	D	458	467	anti-parallel
Strand 7	D	445	446	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	165	167	parallel
Strand 3	D	215	218	anti-parallel
Strand 4	D	206	210	anti-parallel
Strand 5	D	484	493	anti-parallel
Strand 6	D	458	467	anti-parallel
Strand 7	D	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	158	159	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	252	259	parallel
Strand 4	D	355	362	parallel
Strand 5	D	383	389	parallel
Strand 6	D	409	413	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	511	515	anti-parallel
Strand 3	D	618	624	anti-parallel
Strand 4	D	600	611	anti-parallel
Strand 5	D	584	593	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	539	first strand
Strand 2	D	907	908	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	661	first strand
Strand 2	D	740	743	anti-parallel
Strand 3	D	729	736	anti-parallel
Strand 4	D	810	816	anti-parallel
Strand 5	D	792	797	anti-parallel
Strand 6	D	774	776	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	800	801	first strand
Strand 2	D	806	807	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	848	853	first strand
Strand 2	D	1014	1019	anti-parallel
Strand 3	D	1001	1007	anti-parallel
Strand 4	D	989	994	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	904	first strand
Strand 2	D	972	983	anti-parallel
Strand 3	D	1036	1038	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MIY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MIY