Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MJ1 entry

There are 6 chains in PDB entry 7MJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 46	MET 246
C	ASN 46	MET 246
D	ASN 46	MET 246
E	ALA 36	MET 246
F	ARG 44	MET 246
B	ARG 44	MET 246

There are 62 helices in PDB entry 7MJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	70	Right-handed alpha
Helix 2	AA2	A	125	127	Right-handed 310
Helix 3	AA3	A	128	142	Right-handed alpha
Helix 4	AA4	A	153	156	Right-handed 310
Helix 5	AA5	A	157	163	Right-handed alpha
Helix 6	AA6	A	163	169	Right-handed alpha
Helix 7	AA7	A	181	191	Right-handed alpha
Helix 8	AA8	A	207	209	Right-handed 310
Helix 9	AA9	A	210	219	Right-handed alpha
Helix 10	AB1	A	232	245	Right-handed alpha
Helix 11	AB2	C	58	69	Right-handed alpha
Helix 12	AB3	C	82	88	Right-handed alpha
Helix 13	AB4	C	125	127	Right-handed 310
Helix 14	AB5	C	128	142	Right-handed alpha
Helix 15	AB6	C	153	156	Right-handed 310
Helix 16	AB7	C	157	163	Right-handed alpha
Helix 17	AB8	C	163	169	Right-handed alpha
Helix 18	AB9	C	181	189	Right-handed alpha
Helix 19	AC1	C	204	208	Right-handed 310
Helix 20	AC2	C	210	219	Right-handed alpha
Helix 21	AC3	C	232	245	Right-handed alpha
Helix 22	AC4	D	59	67	Right-handed alpha
Helix 23	AC5	D	82	88	Right-handed alpha
Helix 24	AC6	D	89	93	Right-handed 310
Helix 25	AC7	D	125	127	Right-handed 310
Helix 26	AC8	D	128	142	Right-handed alpha
Helix 27	AC9	D	156	163	Right-handed alpha
Helix 28	AD1	D	163	169	Right-handed alpha
Helix 29	AD2	D	181	189	Right-handed alpha
Helix 30	AD3	D	210	219	Right-handed alpha
Helix 31	AD4	D	232	245	Right-handed alpha
Helix 32	AD5	E	58	68	Right-handed alpha
Helix 33	AD6	E	82	87	Right-handed alpha
Helix 34	AD7	E	125	127	Right-handed 310
Helix 35	AD8	E	128	142	Right-handed alpha
Helix 36	AD9	E	153	156	Right-handed 310
Helix 37	AE1	E	157	163	Right-handed alpha
Helix 38	AE2	E	163	169	Right-handed alpha
Helix 39	AE3	E	181	191	Right-handed alpha
Helix 40	AE4	E	207	209	Right-handed 310
Helix 41	AE5	E	210	219	Right-handed alpha
Helix 42	AE6	E	232	245	Right-handed alpha
Helix 43	AE7	F	60	70	Right-handed alpha
Helix 44	AE8	F	82	88	Right-handed alpha
Helix 45	AE9	F	125	127	Right-handed 310
Helix 46	AF1	F	128	142	Right-handed alpha
Helix 47	AF2	F	157	163	Right-handed alpha
Helix 48	AF3	F	163	169	Right-handed alpha
Helix 49	AF4	F	182	191	Right-handed alpha
Helix 50	AF5	F	207	209	Right-handed 310
Helix 51	AF6	F	210	219	Right-handed alpha
Helix 52	AF7	F	232	245	Right-handed alpha
Helix 53	AF8	B	60	67	Right-handed alpha
Helix 54	AF9	B	82	88	Right-handed alpha
Helix 55	AG1	B	125	127	Right-handed 310
Helix 56	AG2	B	128	142	Right-handed alpha
Helix 57	AG3	B	157	163	Right-handed alpha
Helix 58	AG4	B	163	169	Right-handed alpha
Helix 59	AG5	B	181	189	Right-handed alpha
Helix 60	AG6	B	207	209	Right-handed 310
Helix 61	AG7	B	210	219	Right-handed alpha
Helix 62	AG8	B	232	245	Right-handed alpha

There are 12 sheets in PDB entry 7MJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	76	79	parallel
Strand 3	A	104	107	anti-parallel
Strand 4	A	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	119	123	parallel
Strand 3	A	172	177	parallel
Strand 4	A	195	199	parallel
Strand 5	A	225	227	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	53	first strand
Strand 2	C	76	79	parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	149	first strand
Strand 2	C	118	123	parallel
Strand 3	C	173	177	parallel
Strand 4	C	195	199	parallel
Strand 5	C	225	227	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	76	79	parallel
Strand 3	D	104	107	anti-parallel
Strand 4	D	96	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	149	first strand
Strand 2	D	118	123	parallel
Strand 3	D	173	177	parallel
Strand 4	D	195	199	parallel
Strand 5	D	225	227	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	104	107	anti-parallel
Strand 3	E	96	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	150	first strand
Strand 2	E	118	123	parallel
Strand 3	E	172	177	parallel
Strand 4	E	195	199	parallel
Strand 5	E	225	227	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	53	first strand
Strand 2	F	76	79	parallel
Strand 3	F	104	106	anti-parallel
Strand 4	F	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	149	first strand
Strand 2	F	118	123	parallel
Strand 3	F	173	177	parallel
Strand 4	F	195	199	parallel
Strand 5	F	225	227	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	76	79	parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	96	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	118	123	parallel
Strand 3	B	172	177	parallel
Strand 4	B	195	199	parallel
Strand 5	B	225	227	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJ1