Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MJ5 entry

There are 11 chains in PDB entry 7MJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	ASN 35
L	GLU 6	GLY 22
H	ILE 16	PHE 245
B	GLY 5	GLY 22
C	ILE 16	PHE 246
D	ALA 7	ILE 22
E	ILE 16	GLN 245
F	ALA 7	ILE 22
G	ILE 16	PHE 246
I	GLY 5	ILE 23
J	ILE 16	ASP 63

There are 72 helices in PDB entry 7MJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	26	34	Right-handed alpha
Helix 3	AA3	L	15	19	Right-handed 310
Helix 4	AA4	L	22	22	Right-handed alpha
Helix 5	AA5	H	55	59	Right-handed alpha
Helix 6	AA6	H	60	60	Right-handed 310
Helix 7	AA7	H	60	62	Right-handed 310
Helix 8	AA8	H	125	130	Right-handed alpha
Helix 9	AA9	H	147	149	Right-handed 310
Helix 10	AB1	H	164	171	Right-handed alpha
Helix 11	AB2	H	185	186	Right-handed 310
Helix 12	AB3	H	234	245	Right-handed alpha
Helix 13	AB4	B	15	19	Right-handed 310
Helix 14	AB5	B	22	22	Right-handed alpha
Helix 15	AB6	C	55	59	Right-handed alpha
Helix 16	AB7	C	60	60	Right-handed 310
Helix 17	AB8	C	60	62	Right-handed 310
Helix 18	AB9	C	125	130	Right-handed alpha
Helix 19	AC1	C	147	149	Right-handed 310
Helix 20	AC2	C	164	171	Right-handed alpha
Helix 21	AC3	C	185	186	Right-handed 310
Helix 22	AC4	C	235	246	Right-handed alpha
Helix 23	AC5	D	15	19	Right-handed 310
Helix 24	AC6	D	22	22	Right-handed alpha
Helix 25	AC7	E	55	58	Right-handed 310
Helix 26	AC8	E	60	60	Right-handed 310
Helix 27	AC9	E	60	62	Right-handed 310
Helix 28	AD1	E	125	130	Right-handed alpha
Helix 29	AD2	E	147	149	Right-handed 310
Helix 30	AD3	E	164	171	Right-handed alpha
Helix 31	AD4	E	185	186	Right-handed 310
Helix 32	AD5	E	235	245	Right-handed alpha
Helix 33	AD6	F	15	19	Right-handed 310
Helix 34	AD7	F	22	22	Right-handed alpha
Helix 35	AD8	G	55	58	Right-handed 310
Helix 36	AD9	G	60	60	Right-handed 310
Helix 37	AE1	G	60	62	Right-handed 310
Helix 38	AE2	G	125	130	Right-handed alpha
Helix 39	AE3	G	147	149	Right-handed 310
Helix 40	AE4	G	164	171	Right-handed alpha
Helix 41	AE5	G	185	186	Right-handed 310
Helix 42	AE6	G	235	246	Right-handed alpha
Helix 43	AE7	I	15	19	Right-handed 310
Helix 44	AE8	I	22	22	Right-handed alpha
Helix 45	AE9	J	55	59	Right-handed alpha
Helix 46	AF1	J	60	60	Right-handed 310
Helix 47	AF2	J	60	62	Right-handed 310
Helix 48	AF3	J	125	130	Right-handed alpha
Helix 49	AF4	J	147	149	Right-handed 310
Helix 50	AF5	J	164	171	Right-handed alpha
Helix 51	AF6	J	185	186	Right-handed 310
Helix 52	AF7	J	235	246	Right-handed alpha
Helix 53	AF8	K	15	19	Right-handed 310
Helix 54	AF9	K	22	22	Right-handed alpha
Helix 55	AG1	M	55	58	Right-handed 310
Helix 56	AG2	M	60	60	Right-handed 310
Helix 57	AG3	M	60	62	Right-handed 310
Helix 58	AG4	M	125	130	Right-handed alpha
Helix 59	AG5	M	147	149	Right-handed 310
Helix 60	AG6	M	164	171	Right-handed alpha
Helix 61	AG7	M	185	186	Right-handed 310
Helix 62	AG8	M	235	246	Right-handed alpha
Helix 63	AG9	N	16	20	Right-handed 310
Helix 64	AH1	N	26	35	Right-handed alpha
Helix 65	AH2	O	16	20	Right-handed 310
Helix 66	AH3	O	26	35	Right-handed alpha
Helix 67	AH4	P	16	20	Right-handed 310
Helix 68	AH5	P	26	34	Right-handed alpha
Helix 69	AH6	Q	16	20	Right-handed 310
Helix 70	AH7	Q	26	35	Right-handed alpha
Helix 71	AH8	R	16	20	Right-handed 310
Helix 72	AH9	R	26	35	Right-handed alpha

There are 18 sheets in PDB entry 7MJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	156	161	anti-parallel
Strand 3	H	135	140	anti-parallel
Strand 4	H	198	202	anti-parallel
Strand 5	H	207	215	anti-parallel
Strand 6	H	226	230	anti-parallel
Strand 7	H	180	183	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	35	first strand
Strand 2	H	39	46	anti-parallel
Strand 3	H	51	54	anti-parallel
Strand 4	H	104	108	anti-parallel
Strand 5	H	81	90	anti-parallel
Strand 6	H	64	68	anti-parallel
Strand 7	H	30	35	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	60	first strand
Strand 2	H	60	60	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	135	140	anti-parallel
Strand 4	C	198	202	anti-parallel
Strand 5	C	207	215	anti-parallel
Strand 6	C	227	231	anti-parallel
Strand 7	C	180	183	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	35	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	81	90	anti-parallel
Strand 6	C	64	68	anti-parallel
Strand 7	C	30	35	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	60	first strand
Strand 2	C	60	60	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	135	140	anti-parallel
Strand 4	E	198	202	anti-parallel
Strand 5	E	207	215	anti-parallel
Strand 6	E	227	231	anti-parallel
Strand 7	E	180	183	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	35	first strand
Strand 2	E	39	46	anti-parallel
Strand 3	E	51	54	anti-parallel
Strand 4	E	104	108	anti-parallel
Strand 5	E	81	90	anti-parallel
Strand 6	E	64	68	anti-parallel
Strand 7	E	30	35	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	60	first strand
Strand 2	E	60	60	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	156	161	anti-parallel
Strand 3	G	135	140	anti-parallel
Strand 4	G	198	202	anti-parallel
Strand 5	G	207	215	anti-parallel
Strand 6	G	227	231	anti-parallel
Strand 7	G	180	183	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	35	first strand
Strand 2	G	39	46	anti-parallel
Strand 3	G	51	54	anti-parallel
Strand 4	G	104	108	anti-parallel
Strand 5	G	81	90	anti-parallel
Strand 6	G	64	68	anti-parallel
Strand 7	G	30	35	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	60	first strand
Strand 2	G	60	60	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	21	first strand
Strand 2	J	156	161	anti-parallel
Strand 3	J	135	140	anti-parallel
Strand 4	J	198	202	anti-parallel
Strand 5	J	207	215	anti-parallel
Strand 6	J	227	231	anti-parallel
Strand 7	J	180	183	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	35	first strand
Strand 2	J	39	46	anti-parallel
Strand 3	J	51	54	anti-parallel
Strand 4	J	104	108	anti-parallel
Strand 5	J	81	90	anti-parallel
Strand 6	J	64	68	anti-parallel
Strand 7	J	30	35	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	60	first strand
Strand 2	J	60	60	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	21	first strand
Strand 2	M	156	161	anti-parallel
Strand 3	M	135	140	anti-parallel
Strand 4	M	198	202	anti-parallel
Strand 5	M	207	215	anti-parallel
Strand 6	M	227	231	anti-parallel
Strand 7	M	180	183	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	35	first strand
Strand 2	M	39	48	anti-parallel
Strand 3	M	51	54	anti-parallel
Strand 4	M	104	108	anti-parallel
Strand 5	M	81	90	anti-parallel
Strand 6	M	64	68	anti-parallel
Strand 7	M	30	35	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	60	60	first strand
Strand 2	M	60	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJ5