Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MJ6 entry

There are 3 chains in PDB entry 7MJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 276
B
 ILE 2MET 100
C
 LEU 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7MJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 56Right-handed 310
Helix 2
AA2
A
57 86Right-handed alpha
Helix 3
AA3
A
138 151Right-handed alpha
Helix 4
AA4
A
152 162Right-handed alpha
Helix 5
AA5
A
163 176Right-handed alpha
Helix 6
AA6
A
176 181Right-handed alpha
Helix 7
AA7
A
254 256Right-handed 310
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There are 7 sheets in PDB entry 7MJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
22 29anti-parallel
Strand 4
A
4 13anti-parallel
Strand 5
A
95 104anti-parallel
Strand 6
A
110 119anti-parallel
Strand 7
A
122 127anti-parallel
Strand 8
A
134 136anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 194first strand
Strand 2
A
199 209anti-parallel
Strand 3
A
242 251anti-parallel
Strand 4
A
229 231anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 194first strand
Strand 2
A
199 209anti-parallel
Strand 3
A
242 251anti-parallel
Strand 4
A
235 236anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
271 274anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
22 31anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
51 52anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
22 31anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
56 57anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
92 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il