Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MJF entry

There are 5 chains in PDB entry 7MJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 296
B
 MET 1GLY 296
C
 MET 1GLY 296
D
 MET 1GLY 296
E
 MET 1ASN 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 7MJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
52 68Right-handed alpha
Helix 4
AA4
A
81 96Right-handed alpha
Helix 5
AA5
A
111 126Right-handed alpha
Helix 6
AA6
A
135 140Right-handed alpha
Helix 7
AA7
A
144 155Right-handed alpha
Helix 8
AA8
A
168 179Right-handed alpha
Helix 9
AA9
A
188 190Right-handed 310
Helix 10
AB1
A
191 198Right-handed alpha
Helix 11
AB2
A
206 210Right-handed 310
Helix 12
AB3
A
211 224Right-handed alpha
Helix 13
AB4
A
226 244Right-handed alpha
Helix 14
AB5
A
248 260Right-handed alpha
Helix 15
AB6
A
277 292Right-handed alpha
Helix 16
AB7
B
20 34Right-handed alpha
Helix 17
AB8
B
47 51Right-handed 310
Helix 18
AB9
B
52 68Right-handed alpha
Helix 19
AC1
B
81 96Right-handed alpha
Helix 20
AC2
B
111 126Right-handed alpha
Helix 21
AC3
B
135 140Right-handed alpha
Helix 22
AC4
B
144 155Right-handed alpha
Helix 23
AC5
B
168 179Right-handed alpha
Helix 24
AC6
B
188 190Right-handed 310
Helix 25
AC7
B
191 198Right-handed alpha
Helix 26
AC8
B
206 210Right-handed 310
Helix 27
AC9
B
211 224Right-handed alpha
Helix 28
AD1
B
226 244Right-handed alpha
Helix 29
AD2
B
248 260Right-handed alpha
Helix 30
AD3
B
277 291Right-handed alpha
Helix 31
AD4
C
20 35Right-handed alpha
Helix 32
AD5
C
47 51Right-handed 310
Helix 33
AD6
C
52 68Right-handed alpha
Helix 34
AD7
C
81 96Right-handed alpha
Helix 35
AD8
C
111 126Right-handed alpha
Helix 36
AD9
C
135 140Right-handed alpha
Helix 37
AE1
C
144 155Right-handed alpha
Helix 38
AE2
C
168 179Right-handed alpha
Helix 39
AE3
C
188 190Right-handed 310
Helix 40
AE4
C
191 198Right-handed alpha
Helix 41
AE5
C
206 210Right-handed 310
Helix 42
AE6
C
211 224Right-handed alpha
Helix 43
AE7
C
226 244Right-handed alpha
Helix 44
AE8
C
248 261Right-handed alpha
Helix 45
AE9
C
277 291Right-handed alpha
Helix 46
AF1
D
20 35Right-handed alpha
Helix 47
AF2
D
47 51Right-handed 310
Helix 48
AF3
D
52 68Right-handed alpha
Helix 49
AF4
D
81 96Right-handed alpha
Helix 50
AF5
D
111 126Right-handed alpha
Helix 51
AF6
D
135 140Right-handed alpha
Helix 52
AF7
D
144 155Right-handed alpha
Helix 53
AF8
D
168 179Right-handed alpha
Helix 54
AF9
D
188 190Right-handed 310
Helix 55
AG1
D
191 198Right-handed alpha
Helix 56
AG2
D
206 210Right-handed 310
Helix 57
AG3
D
211 224Right-handed alpha
Helix 58
AG4
D
226 244Right-handed alpha
Helix 59
AG5
D
248 261Right-handed alpha
Helix 60
AG6
D
277 291Right-handed alpha
Helix 61
AG7
E
20 35Right-handed alpha
Helix 62
AG8
E
47 51Right-handed 310
Helix 63
AG9
E
52 68Right-handed alpha
Helix 64
AH1
E
81 96Right-handed alpha
Helix 65
AH2
E
111 126Right-handed alpha
Helix 66
AH3
E
135 140Right-handed alpha
Helix 67
AH4
E
144 155Right-handed alpha
Helix 68
AH5
E
168 179Right-handed alpha
Helix 69
AH6
E
188 190Right-handed 310
Helix 70
AH7
E
191 198Right-handed alpha
Helix 71
AH8
E
206 210Right-handed 310
Helix 72
AH9
E
211 224Right-handed alpha
Helix 73
AI1
E
226 244Right-handed alpha
Helix 74
AI2
E
248 261Right-handed alpha
Helix 75
AI3
E
277 292Right-handed alpha
Helix 76
AI4
F
20 35Right-handed alpha
Helix 77
AI5
F
47 51Right-handed 310
Helix 78
AI6
F
52 68Right-handed alpha
Helix 79
AI7
F
81 95Right-handed alpha
Helix 80
AI8
F
111 126Right-handed alpha
Helix 81
AI9
F
135 140Right-handed alpha
Helix 82
AJ1
F
144 155Right-handed alpha
Helix 83
AJ2
F
168 179Right-handed alpha
Helix 84
AJ3
F
188 190Right-handed 310
Helix 85
AJ4
F
191 198Right-handed alpha
Helix 86
AJ5
F
206 210Right-handed 310
Helix 87
AJ6
F
211 224Right-handed alpha
Helix 88
AJ7
F
226 244Right-handed alpha
Helix 89
AJ8
F
248 260Right-handed alpha
Helix 90
AJ9
F
277 292Right-handed alpha
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There are 7 sheets in PDB entry 7MJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
202 205parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
99 103parallel
Strand 3
A
130 134parallel
Strand 4
A
158 163parallel
Strand 5
A
183 186parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
202 205parallel
Strand 3
B
183 186parallel
Strand 4
B
158 163parallel
Strand 5
B
130 134parallel
Strand 6
B
99 103parallel
Strand 7
B
74 76parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
202 205parallel
Strand 3
C
183 186parallel
Strand 4
C
158 163parallel
Strand 5
C
130 134parallel
Strand 6
C
99 103parallel
Strand 7
C
74 76parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
202 205parallel
Strand 3
D
183 186parallel
Strand 4
D
158 163parallel
Strand 5
D
130 134parallel
Strand 6
D
99 103parallel
Strand 7
D
74 76parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
202 205parallel
Strand 3
E
183 186parallel
Strand 4
E
158 163parallel
Strand 5
E
130 134parallel
Strand 6
E
99 103parallel
Strand 7
E
74 76parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
202 205parallel
Strand 3
F
183 186parallel
Strand 4
F
158 163parallel
Strand 5
F
130 134parallel
Strand 6
F
99 103parallel
Strand 7
F
74 76parallel
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