Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MJI entry

There are 2 chains in PDB entry 7MJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 333PRO 527
E
 GLU 22SER 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7MJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
338 343Right-handed alpha
Helix 2
AA2
B
365 370Right-handed alpha
Helix 3
AA3
B
383 389Right-handed 310
Helix 4
AA4
B
403 410Right-handed 310
Helix 5
AA5
B
416 422Right-handed alpha
Helix 6
AA6
B
438 443Right-handed alpha
Helix 7
AA7
E
49 53Right-handed 310
Helix 8
AA8
E
84 86Right-handed 310
Helix 9
AA9
E
107 111Right-handed 310
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There are 7 sheets in PDB entry 7MJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
391 402anti-parallel
Strand 3
B
524 525anti-parallel
Strand 4
B
361 362parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
391 402anti-parallel
Strand 3
B
508 517anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 28first strand
Strand 2
E
38 46anti-parallel
Strand 3
E
98 104anti-parallel
Strand 4
E
88 93anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 33first strand
Strand 2
E
139 143parallel
Strand 3
E
112 119anti-parallel
Strand 4
E
55 60anti-parallel
Strand 5
E
66 72anti-parallel
Strand 6
E
78 80anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 33first strand
Strand 2
E
139 143parallel
Strand 3
E
112 119anti-parallel
Strand 4
E
132 135anti-parallel
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