Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MJN entry

There are 2 chains in PDB entry 7MJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 330SER 530
E
 SER 19ALA 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7MJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
337 343Right-handed alpha
Helix 2
AA2
B
349 353Right-handed 310
Helix 3
AA3
B
364 371Right-handed alpha
Helix 4
AA4
B
383 390Right-handed alpha
Helix 5
AA5
B
416 422Right-handed alpha
Helix 6
AA6
B
438 443Right-handed alpha
Helix 7
AA7
E
20 52Right-handed alpha
Helix 8
AA8
E
55 81Right-handed alpha
Helix 9
AA9
E
82 83Right-handed 310
Helix 10
AB1
E
84 88Right-handed 310
Helix 11
AB2
E
90 102Right-handed alpha
Helix 12
AB3
E
103 108Right-handed 310
Helix 13
AB4
E
109 129Right-handed alpha
Helix 14
AB5
E
147 155Right-handed alpha
Helix 15
AB6
E
158 194Right-handed alpha
Helix 16
AB7
E
198 204Right-handed alpha
Helix 17
AB8
E
205 207Right-handed 310
Helix 18
AB9
E
221 249Right-handed alpha
Helix 19
AC1
E
265 267Right-handed 310
Helix 20
AC2
E
275 279Right-handed 310
Helix 21
AC3
E
294 300Right-handed alpha
Helix 22
AC4
E
303 319Right-handed alpha
Helix 23
AC5
E
324 331Right-handed alpha
Helix 24
AC6
E
365 385Right-handed alpha
Helix 25
AC7
E
399 413Right-handed alpha
Helix 26
AC8
E
414 421Right-handed alpha
Helix 27
AC9
E
431 447Right-handed alpha
Helix 28
AD1
E
448 466Right-handed alpha
Helix 29
AD2
E
469 471Right-handed 310
Helix 30
AD3
E
472 484Right-handed alpha
Helix 31
AD4
E
499 502Right-handed 310
Helix 32
AD5
E
503 508Right-handed alpha
Helix 33
AD6
E
513 533Right-handed alpha
Helix 34
AD7
E
547 559Right-handed alpha
Helix 35
AD8
E
560 564Right-handed 310
Helix 36
AD9
E
565 575Right-handed alpha
Helix 37
AE1
E
581 588Right-handed alpha
Helix 38
AE2
E
588 599Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7MJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
262 263first strand
Strand 2
E
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
347 352first strand
Strand 2
E
355 359anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il